Novosphingobium sp. Gsoil 351: GKE62_01245
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Entry
GKE62_01245 CDS
T06443
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nog
Novosphingobium sp. Gsoil 351
Pathway
nog03410
Base excision repair
nog03430
Mismatch repair
nog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GKE62_01245 (recJ)
03430 Mismatch repair
GKE62_01245 (recJ)
03440 Homologous recombination
GKE62_01245 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nog03400
]
GKE62_01245 (recJ)
DNA repair and recombination proteins [BR:
nog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GKE62_01245 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GKE62_01245 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GKE62_01245 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QGN53381
UniProt:
A0A6I5WTQ7
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All DBs
Position
253616..255406
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AA seq
596 aa
AA seq
DB search
MIDVLGIGRSLSGRAWRWRGGNGDFGDDAIDGGRRAEGLDDLVTQLLLARGVKRDDLVRH
KTPTLRAFLPDPSLFRDMDVAAERLARAVTTGERVTIYGDYDVDGATSAALLILVLRDLG
LEAGYYIPDRLLEGYGPSGDALVKLGAEGTTLVVTVDCGAMAHEALAAAHEAGVEVIVVD
HHKCSPDLPLATALVNPNRLDESDEGAAFGHLAAVGVAFLLSIALVRTLRAQGYFADRVE
PDLLALLDLVALGTVADVAALHGLNRAMVAQGLKVMARRGNIGMAALIDASRLSKAPTCS
DLGFALGPRVNAGGRVGEATLGVRLLTTRDADEARDIAAQLSRLNDERRGIEAAVQEAAE
AQLAGQHNRAVVIVSGSGWHPGVIGIVAGRLKERTGKPTLVIALDEIDGTGKGSARSIAG
VDLGAAIIAAREAGLLEAGGGHAMAAGLTVRTGGVAALADWLDARLAGAVTAARTGETML
IDLSLTPGGLTPDLTSALEAAGPFGMGWPGPRIALGPLRMIKADVVGTNHLRMIVGGNDG
ISFKAIAFRAVETEMGQALLHGSKGRRFWLAGRPRLDDWGSRPAAELHVEDAAWAD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacgtgctgggaattggccgctcgctaagcgggcgcgcatggcgttggcgcggc
ggcaatggcgattttggcgacgacgcgatcgacggcggccggcgcgcagaggggctcgac
gatctcgtcacacaactgctgctcgccagaggcgtgaagcgcgacgatctggtcaggcac
aagacgccgacgctacgggcgttcctgccagacccgtcgctgttcagagacatggatgtc
gccgctgaacgcctcgcccgcgcggtcaccaccggcgaacgagtgacgatctacggagac
tacgacgtcgatggtgcaaccagcgcggcgttgctgatcctcgtcctgcgcgatctcgga
ctggaggcgggctactacattcccgaccgcctcctcgaaggctacggcccctcgggcgat
gcactcgtcaagctgggcgccgaaggcacaacgctggtggtgacggtcgattgcggggcg
atggcacacgaggcgctggcggcggcgcacgaggcgggggtcgaggtgatcgtggtcgat
catcacaaatgctcgcccgatttgccgctggcgaccgcgctggtgaaccccaaccggctc
gacgaaagcgacgaaggcgcggcgtttggccaccttgccgcggtgggtgtcgcgttcctc
ctcagcatcgcgctggtccgcaccctgcgggcgcagggctacttcgccgaccgcgtcgag
cccgacctgctcgcactgctcgatctggtcgcgctggggacggtcgccgacgtcgccgcg
cttcacggactcaaccgcgccatggtcgcgcaagggctcaaggtaatggcgcggcgcggg
aacattgggatggccgcactgatagacgcttcgcggctcagcaaagcgccaacgtgcagc
gaccttggtttcgcgctggggccgcgggtcaatgccgggggccgggtcggcgaagcgacg
ctcggcgtgcgtctgctgactacccgcgacgccgacgaggcgcgcgatattgctgcccaa
ttatcccgcctcaacgacgaacgccgcggaatcgaggcggctgtccaggaagccgccgaa
gcgcaactggcgggtcagcacaaccgcgcggttgtcattgtgtctggcagtggatggcat
ccgggcgtgatcggaattgtcgccggacggctcaaggaaaggaccggcaaacccacgctg
gtaatcgcgctcgacgagatcgacggcaccggcaaaggttcggcccgttcgatcgccggg
gtcgatctgggtgccgcgatcatcgccgcgcgcgaggccgggcttcttgaggcgggcggg
ggtcacgccatggctgcggggcttacggtgcgcaccgggggagtggcggcgctggcagac
tggcttgatgcgaggcttgccggcgctgtgacagccgcacgcactggcgagaccatgctt
atcgatctcagcctcacccccggcggcctgacccccgatctgacatccgcgctcgaagcc
gcgggaccgttcgggatgggctggccgggaccgcgaatcgcgctggggccgctgaggatg
atcaaggcggacgttgtcggcaccaaccacctgcggatgatagttggtggcaacgacggc
atttcgttcaaggctatcgcctttcgcgcggtcgagaccgagatgggtcaggcgctgctc
cacggtagcaaggggcggcgattctggcttgccgggcgccctagactcgacgactggggc
agccgccccgccgccgaattgcatgtcgaggacgccgcctgggcggattga
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