Nocardioides okcheonensis: LN652_07755
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Entry
LN652_07755 CDS
T07822
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LN652_07755 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_07755 (ligD)
Enzymes [BR:
noq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LN652_07755 (ligD)
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LN652_07755 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UFN46085
LinkDB
All DBs
Position
complement(1604115..1605008)
Genome browser
AA seq
297 aa
AA seq
DB search
MSEVQVDVEGRTLTISNLDKVLYPRTGTTKGEVLHYYAAVAPVLLPHLRDRAVTRIRWPH
GVEGSSFFEKNAPAGTPSWVRTVEVPTTGSRTGKGDGTLRFPICDDLATLTWLANLAALE
LHVHQWTVEEDGTPRHPDRLVIDLDPGEPAGLHECAQVALLVREALAERDLTCTPVTSGS
KGLHLYARLPGDLDSDGTTELAREVAEALQKAHPDLVTATMTKAKRPGKVFLDWSQNSGS
KTTVSPYSLRGRERPTVATPLTWDEVEEGADDDLALEQLGMEQVLERVAELGDVFDA
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaggtgcaggtcgacgtcgagggccgcacgctgaccatcagcaacctcgacaag
gtgctctacccgcgcaccggcaccaccaagggcgaggtgctgcactactacgccgccgtc
gcccccgtcctgctcccgcacctgcgcgaccgggcggtgacccgcatccgctggccgcac
ggcgtggagggctccagcttcttcgagaagaacgcacccgccggcacgccgtcgtgggtg
cggaccgtcgaggtgccgaccaccggctcgcgcaccggcaagggcgacggcacactccgc
ttcccgatctgcgacgacctcgccaccctcacctggctggccaacctcgcggcgctcgag
ctgcacgtgcaccagtggacggtcgaggaggacggcacgccgcgccaccccgaccggctg
gtgatcgacctcgaccccggcgagcccgccgggctgcacgagtgtgcgcaggtggcgctg
ctggtgcgcgaggcgctcgccgagcgcgacctgacctgcaccccggtgacgagcggcagc
aaggggctccacctctacgcccgcctgcccggtgacctcgacagcgacggcacgaccgag
ctggcgcgcgaggtcgccgaggcgctgcagaaggcacaccccgacctggtgacggcgacc
atgaccaaggccaagcggccgggcaaggtgttcctcgactggtcgcagaacagcggctcc
aagacgaccgtgtcgccgtactccctgcgcggacgcgagcggcccaccgtcgccacgccc
ctgacgtgggacgaggtcgaggagggcgcggacgacgacctcgcgctcgagcagctcggc
atggagcaggtgctggagcgcgtggccgagctgggcgacgtgttcgacgcctga
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