Novosphingobium sp. P6W: TQ38_017685
Help
Entry
TQ38_017685 CDS
T05550
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nov
Novosphingobium sp. P6W
Pathway
nov03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TQ38_017685 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nov03400
]
TQ38_017685 (ligD)
Enzymes [BR:
nov01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TQ38_017685 (ligD)
DNA repair and recombination proteins [BR:
nov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TQ38_017685 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DUF3809
Motif
Other DBs
NCBI-ProteinID:
AXB78481
UniProt:
A0A2Z5EFP6
LinkDB
All DBs
Position
2:complement(276049..278586)
Genome browser
AA seq
845 aa
AA seq
DB search
MAAVPASGRSGKAGNPGADLLAEYNRKRDFARTAEPAGRSGRTGGNSFIVQKHAARRLHW
DFRLEVDGVLKSWAVTRGPSADPEDKRLAVRTEDHPLSYSEFEGGIPKGEYGGGTVMLWD
RGTWAPIAGKSAKDIEDGHLHFTLDGERMKGEWLLVRMKPRPGEKRENWLLRKVKDAHAQ
TGDVLVEQGLSSVLTGRTMAEIEADKGGTHSLKGKKGDAFAKVMEKASARNAQSARKTPG
NPPKFRAVQLATLVDTVPTGNLWMHEIKFDGYRALVAAAGAKVVVHTRSGLDWTNKFAPL
AAHIAALDLPPCLIDGEIIARGVDGNPDFSSLQAVLKRGNGSQSEHQPLEFHAFDLLELD
GEDLAAMPNIERKERLEALLADAAPPVFVADHVIGAGEKLYDAMCAAGQEGIIAKRVDAP
YRGRRTKEWVKVKCTRRQEFVIVGWAKSSAKGRPFSSLLLGQYEGKTLVYRGKVGTGFDA
EGLADMAVRLEKLARKTAPLEIERAETRGASWVTPKLVAEVAFAELTGEGRVRHGSFLGL
RTDKKARAVTPEKAQAAPQAAIAVKISNRERVIFPESGGTKGDLADYYAAVAPLILPFVA
NRPISLVRCPQGRAKKCFFQKHDSGTFGDHVHHVPIREKDGGAEDYLYLDDAEGLLSCVQ
MGTIEFHGWAARADDVEHPDRMIFDLDPDEGLDFKECVRAAGDIRARLADLGLVTFAMLS
GGKGIHVVVPLKRGHDWDTHKDFSRRFAEAMSLSEPDRYVATMSKAKRKGRIFIDWLRNQ
RGATAVLPYSARSREGAPVAVPISWDELDATKTAHPFSIGDAPELIRRSDTLHGWGFADQ
RLPEI
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccgtgcccgcaagcgggcgtagcggcaaggccggcaaccccggcgccgacctt
ctcgccgaatacaaccgcaagcgcgacttcgcgaggaccgccgaacccgcaggcaggagc
ggccggaccggcggcaacagcttcatcgtgcagaagcacgccgcgcggcgattgcactgg
gatttccgcctcgaagtcgatggtgtgctcaagtcctgggcagtgacccgggggccaagt
gccgatcccgaagacaagcgccttgccgtccgcaccgaggaccatccactctcttacagc
gaattcgagggcggcatccccaagggcgagtacggcggcggcacggtgatgctctgggac
cggggcacctgggcgccgatcgcgggcaagagcgcgaaggacatcgaggacggccatctc
catttcaccctcgacggcgagcggatgaaaggcgaatggctgctggtgcgcatgaagccc
aggccgggcgagaagcgcgagaactggttgctgcgcaaggtgaaggatgcccatgcgcag
acgggcgatgtccttgtcgagcagggcctcagcagcgtcctcaccggccgcaccatggcc
gagattgaagccgacaagggcggcacccattcgctgaaaggcaagaagggcgatgctttc
gcgaaggtcatggaaaaggcctcggcccgcaatgcgcagtccgcgcggaaaacgccgggc
aacccgccgaaattccgcgccgtccagctcgccacgctggtcgacactgtacccaccggc
aatctttggatgcacgagataaagttcgacggctaccgtgcgctcgtcgccgcggcgggc
gccaaggtcgtcgtccatacccgcagcggcctcgactggaccaacaagttcgccccgctc
gccgcgcacatcgccgcgttggacctgcctccctgcctgatcgatggcgagatcatcgcc
cggggggtggacggcaatcccgatttctccagcctccaggccgtgctcaagcgcggcaac
ggcagccagagcgaacaccagcccctggaatttcatgcgttcgacctgctcgaactcgat
ggggaggatctggcggcgatgcccaacatcgaacgcaaggaacggctcgaagcgctgctg
gcggatgccgctccgcccgttttcgtcgccgaccacgtgatcggcgcgggcgaaaagctc
tacgacgcgatgtgtgctgccgggcaggaagggatcatcgccaagcgcgtcgatgcgccg
taccggggccgccgcaccaaggaatgggtcaaggtcaagtgtacccggcgacaagagttc
gtcatcgtgggatgggcgaagtcgagcgccaagggtcgtccgttctcgtccctgttgctc
ggtcagtacgaaggcaagacccttgtctatcgcggcaaggtgggcaccggtttcgacgcc
gaggggcttgccgacatggcggtccggcttgagaagctggcgcgcaagactgcgccgctg
gagatcgagcgggccgagacacgcggcgcaagctgggtcactccgaaactggtggcagaa
gtggcctttgccgaactgaccggcgagggccgtgttcgccatggcagcttcctcggcctc
aggaccgacaagaaggctcgggcggtgaccccggagaaagcccaggccgcgccgcaggcc
gctatcgcagtgaagatcagtaaccgtgagcgcgtcatcttccccgaaagcggcggcact
aagggcgaccttgcggactactatgccgccgtcgcgccgctcatactgccgttcgtcgcg
aaccggccgatcagcctcgtccgctgcccgcagggacgagcgaagaaatgcttttttcag
aagcacgacagcggcactttcggcgatcacgttcatcacgtgccgatccgcgaaaaggac
ggcggcgcggaggattacctctatctggacgatgccgagggacttctttcctgcgtgcag
atgggcacgatcgaattccacggctgggcggcacgggccgacgacgtggaacatcccgat
cgcatgatctttgacctcgaccccgacgaagggctggatttcaaggaatgcgtccgagcc
gcaggcgacatccgcgcccggctggccgaccttgggctggtgaccttcgccatgctctcc
ggcggcaagggcatccatgtcgtcgtgccgctgaaacggggccacgactgggatacccac
aaggacttctcgcgccgctttgccgaagccatgagcctgtcagagcccgaccgctacgtt
gcaaccatgagcaaggccaagcgcaagggccgcatcttcatcgactggttgcgcaatcag
cgcggggcgacggccgtactgccgtattccgcacggtcacgggaaggcgccccggtcgcc
gtcccgataagctgggacgaactcgatgccacgaagactgcgcatccattctcgatcggc
gatgctcctgagttgatcaggcggtcggatacgctgcatggctggggttttgccgaccaa
cggcttccggaaatttga
DBGET
integrated database retrieval system