Nonomuraea phyllanthi: GBF35_45140
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Entry
GBF35_45140 CDS
T06257
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
now
Nonomuraea phyllanthi
Pathway
now03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
now00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GBF35_45140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
now03400
]
GBF35_45140 (mfd)
Enzymes [BR:
now01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GBF35_45140 (mfd)
DNA repair and recombination proteins [BR:
now03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GBF35_45140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QFY12812
LinkDB
All DBs
Position
complement(9833817..9837305)
Genome browser
AA seq
1162 aa
AA seq
DB search
MSLSGLLDLVRADPKLTAALEEGGDVALIAPTALRPFGVAALASHDQRTVLAITATGREA
EDLAAALTSLIEPGSVAVFPAWETLPHERLSPRSDTVGQRLAVLRRLAHPVKGDTAAGPL
SVIVAPVRALLQPIVKGLGDLEPIRLRAGDDADLDEVVANLVTNGYHRVDMVEKRGEVAV
RGGLLDVFPPTEEHPLRLEFWGDTVEEIRWFKVADQRSLEAAEDGLFAPPCRELLLTDEV
RGRARELAEEHPALAEVLDQLAEGTPVEGMEAFAPVLAGEMDLLLDHLPVRSAVFVCDPE
RIRGRAEELVRTSQEFLEASWINAAAGGEAPIDLGAAAFRTLEEIRGHADVLGQPWWTMA
PFGGGVELDAQDSEAYRGDTAKALADIKGWLADDKAVVLLSEGHGPAERMVELLKGVDVP
ARLQRFLDKAPEPKVVHVTTGLIEHGFITPGLAVLTHLDLVGQKASTKDMRRLPSRRRNM
VDPLQLKVGDHVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAKGDRLYVPTDQLDEVTR
YVGGEAPTLNRMGGADWAKAKSRAKKAVKEIAGELIRLYSARMASPGHAFGTDTPWQREM
EDAFPYAETGDQLAAIDEVKRDMERGVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVA
VLVPTTLLVQQHMSTFAERFSSFPVVIRPISRFQTDGEVKGTLEGLRSGAVDVVIGTHRL
LSPEVRFKDLGLIIIDEEQRFGVEHKEAMKHLRTQVDVLAMSATPIPRTLEMGLTGIREM
STILTPPEERHPILTFVGPYEEKQIAAAIRRELMRDGQIFFVHNRVASINRVGARLRELV
PEARIAVAHGQMNEHQLEKIMVGFWERDYDLLVSTTIVESGLDVPNANTLIVDRADNYGL
SQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATISQHTEMGAGMYVAMKDLEIR
GAGNVLGAEQSGFIAGVGFDLYVRLMAEAVQEQKAKLDGGEAREEQQDVKVELPINAHIP
HDYVTSERLRLEAYKRIAAIASPADIEEVRDELSDRYGKPPAEVENLLEVARFRIKARQA
GLTDVTLQAQNIKFGPARLRESQQVRLDRLYKKAIYKQAAETLLVPVPKTKPLGGQPLRD
LDLLKWCGDLVEALFLEPARVS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgagtctttccgggctgcttgaccttgttcgcgccgacccgaaactgaccgccgctctc
gaagagggcggcgatgtcgcgctgatcgcgccgaccgcgctgcggccgttcggcgtggcc
gcgctggcctcgcacgaccagcgcaccgtgctcgcgatcaccgcgacgggccgcgaggcg
gaagacctcgccgccgcgctgacgagcctgatcgagcccggctccgtggccgtgttcccc
gcgtgggagacgctgccgcacgagcggctctcgccgcgcagcgacaccgtggggcagcgg
ctggcggtgctcaggaggctggcgcacccggtcaagggcgacaccgcggccgggccgctc
agcgtgatcgtggcgccggtcagggcgctgctgcagccgatcgtgaagggcctgggcgac
ctggagccgatcaggctgcgggccggtgacgacgccgacctcgacgaggtcgtcgccaac
ctggtgaccaacggctaccaccgggtcgacatggtggagaagcgcggcgaggtggcggtg
cgcggcgggctgctcgacgtgttcccgccgaccgaggagcacccgctgcggctggagttc
tggggcgacacggtcgaggagatccgctggttcaaggtggccgaccagcgctcgctggag
gcggccgaggacggcctgttcgcgccgccgtgccgggagctgctgctgaccgacgaggtc
aggggcagggcgcgggagctggccgaggagcaccccgcgctggccgaggtgctcgaccag
ctcgccgagggcacgccggtcgagggcatggaggcgttcgcgcccgtgctggccggggag
atggacctgctgctcgaccacctgccggtgcgctccgcggtgttcgtgtgcgatcccgag
cggatcagggggcgggcggaggagctcgtacgcacctcgcaggagttcctggaggcctcc
tggatcaacgcggcggccggcggcgaggcgcccatcgacctgggcgcggcggcgttccgc
acgctggaggagatccgcggccacgccgacgtgctggggcagccgtggtggacgatggcg
ccgttcggcggcggcgtcgagctcgacgcccaggactccgaggcctaccgcggcgacacc
gccaaggcgctggccgacatcaagggctggctggccgacgacaaggccgtcgtgctgctc
agcgagggccacggcccggccgagcgcatggtggagctgctcaagggcgtcgacgtgccg
gccaggctccagcgcttcctggacaaggcgcccgagcccaaggtcgtccacgtcacgacg
ggcctgatcgagcacggcttcatcacccccgggctggccgtgctcacccatctcgacctg
gtcgggcagaaggcgtccaccaaggacatgcggcggctgccgtcgcgccgccgcaacatg
gtcgacccgctccagctcaaggttggcgaccacgtggtgcacgagcagcacggcgtgggc
cgctacgtcgagatggtccagcgcacggtgcagggcgccacccgcgaatacctcgtcatc
gagtacgccaagggcgaccgcctctacgtgccgaccgaccagctcgacgaggtcacccgc
tacgtcggcggcgaggcgcccacgctcaaccgcatgggcggcgccgactgggccaaggcc
aagtcccgggcgaagaaggcggtcaaggagatcgcgggcgagctgatcaggctctactcc
gcgcgcatggcctcgcccggccacgcgttcggcaccgacacgccgtggcagcgggagatg
gaggacgccttcccgtacgccgagaccggcgaccagctcgcggccatcgacgaggtcaag
cgcgacatggagcgcggcgtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagaccgagatcgcggtgcgggcggcgttcaaggccgtgcaggacggcaagcaggtcgcc
gtgctggtgccgacgacgctgctggtgcagcagcacatgtcgacgttcgccgagcggttc
tccagcttccccgtcgtcatcaggccgatctcgcgcttccagaccgacggcgaggtcaag
ggcacgctcgaagggctcaggtcgggcgcggtcgacgtggtgatcggcacgcaccggctg
ctcagccccgaggtcaggttcaaggacctcgggctcatcatcatcgacgaggagcagcgg
ttcggcgtcgagcacaaggaggcgatgaagcacctgcgcacccaggtcgacgtgctggcc
atgtcggcgacgccgatcccgcgcacgctggagatgggtctgaccggcatccgcgagatg
tccacgatcctcaccccgccggaggagcggcacccgatcctcacgttcgtggggccgtac
gaggagaagcagatcgcggccgcgatcaggcgcgagctgatgcgcgacgggcagatcttc
ttcgtgcacaaccgggtcgcctcgatcaaccgcgtgggcgcgcggctgcgcgagctggtg
cccgaggcgcgcatcgcggtggcgcacgggcagatgaacgagcaccagctggagaagatc
atggtcggcttctgggagcgcgactacgacctgctggtctccaccacgatcgtcgagtcc
gggctcgacgtgcccaacgccaacacgctgatcgtcgaccgggccgacaactacggcctc
tcgcagctccaccagctgcgcgggcgcgtcgggcgcggcagggagcgcggttacgcgtac
ttcctctacccgccggagaagccgctcaccgagaccgcgcacgagcggctggccacgatc
tcgcagcacaccgagatgggcgcgggcatgtacgtcgcgatgaaggatttggagatccgc
ggcgcgggcaacgtgctcggggccgagcagtccgggttcatcgccggcgtcggcttcgac
ctgtacgtccggctgatggccgaggccgtgcaggagcagaaggccaagctcgacggcggc
gaggcgcgcgaggagcagcaggacgtcaaggtcgagctgccgatcaacgcccacatcccg
cacgactacgtcacctccgagcggctgcggctggaggcgtacaagcggatcgccgccatc
gcctcgcccgccgacatcgaggaggtgcgcgacgagctgagcgaccgctacggcaagccg
cccgcggaggtcgagaacctcctggaggtggccaggttccgcatcaaggcgcgccaggcg
gggctcacggacgtcacgctgcaggcccagaacatcaagttcggccccgcgaggctgcgc
gagtcgcagcaggtcaggctcgaccggctgtacaagaaggcgatatacaagcaggcggcc
gagacgctgctggtgccggtgcccaagaccaagccgctcggagggcagccgctacgcgat
ctcgacctgctgaaatggtgcggcgacctggtcgaggcgctgttcctcgagccagcgcgg
gtaagctag
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