Neofusicoccum parvum: UCRNP2_5209
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Entry
UCRNP2_5209 CDS
T03126
Name
(GenBank) putative dna repair protein rad50 protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
npa
Neofusicoccum parvum
Pathway
npa03440
Homologous recombination
npa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
UCRNP2_5209
03450 Non-homologous end-joining
UCRNP2_5209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npa03032
]
UCRNP2_5209
03400 DNA repair and recombination proteins [BR:
npa03400
]
UCRNP2_5209
DNA replication proteins [BR:
npa03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
UCRNP2_5209
DNA repair and recombination proteins [BR:
npa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
UCRNP2_5209
BRCA1-C complex
UCRNP2_5209
NHEJ (non-homologous end-joining)
MRX complex
UCRNP2_5209
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_21
AAA_29
AAA_22
AAA_13
AAA_16
Motif
Other DBs
NCBI-ProteinID:
EOD48039
UniProt:
R1GQ34
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MCLKRPYIDKLSILGVRSFDNRVSETIQFYSPLTLIVGFNGSGKTTIIECLKYATTGELP
PNSERGKSFIHDPNLCGEKEVLAQVKMSFKATSGVKMVSTRSLQLTVKKSGSGTTRTVKA
LEGQLLMVKDGERTAISSRVAELNQIMPQYLGIAPAILEYVIFCHQEESMWPMSEPSTLK
KRFDAIFEALKYTKAIENIKILQKRQKEELGKLRIIEQHSKEDKEKGEKAEKRATDLYDE
IEELRTQINALEDGIKDAATRSQEAWDHAAEFQNIVSRLKGKRIEASATERNVEELRQNI
REMTDTDEELQAHLDQYEERVQLYEKDRQEKIQRYNEITQATKRIRASLGTKQNDVGKHQ
ANKDAYERQLKARASLIKETAHRHSIRGFDLEINDEQVRDFMERINKMAKDQQTALQRAR
KQKQDELQVANRELNQVNQRKSALEASKNNHKSQIAGNEKKMSDLQENFNKIDVDEGSKA
RLESSLEDINRRLDKAKADRAAAHWEEKISEANGQIRELEDEKEKLDAEMVEATRRAGDS
AQLDYVRKEVKARQTSLAKNTGTHREPISRIIGQTWEPSTLETDFNAALQQRSGELRDTE
LQRDGTTRELEQIQFKLTTAKNDLSKKREVLKTSEERVDEALDEDETPDGFPEALSTAEA
NVDVAKNDATGFGHMGKFYKDCLSTLENHNICQLCRRGFKKDSEKSTFQKRLEDRIQEAV
KDSYKDILKEQQEELEKLREAQPFYDTWVRLKDSEIPALEAACRDLESKRDDLLRVIEGQ
DQRVNERQESKRDVEFMTKDVQAIIQDYKAIRTFEEQIKELSAKQAHLGVFRGVEKIQDD
LKKINDQLKANKNKLAQLTTEKERARETISHLELESKDIGAKVTDAEYALREKNSLHTQI
QDVRSRTAEHRESIRQTDQDLQTLIPDVEQAQAKYDAIEQRGAQKEHELQAAYDNTTESL
RSLKNANQEISAYLESGGLNQLTQARREIEDLQEESQQMEMEQREITAETKKIDEQLRDH
TETKRAINDNLRFRSGLKKLGKLREEVEELEKHNAEVDKDRYEREASKWQHERNRLSAEQ
ASLIGTVRSKDDQLKQYAADWETDYKHAAQNYKEAHIKVETTKAAIEDLGRYGGALDKAI
VKYHSLKLEEINRIIEELWKKTYQGTDIDTILIRSENESSSKSRSYNYRVVMVKQDAEMD
MRGRCSAGQKVLASIIIRLALAECFGINCGLIALDEPTTNLDRDNIRALAESLAEIIRVR
RQQSNFQLIVITHDEEFLRYMQCADFSDYYYRVSRNEKQKSTIEKQSIAEVL
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtgcctgaagcggccgtacatcgacaagctgtccatcctgggcgtccgctcgttcgac
aaccgagtcagcgagacaattcagttctacagcccgctcacgctcattgtcggtttcaac
ggctcggggaagacgactatcatcgaatgtctcaagtatgccacgacgggtgagctgccg
cccaatagcgagcgcggcaagtccttcatccatgatcccaacctctgcggtgagaaggaa
gtcttggctcaggtcaagatgtccttcaaggctacatctggcgttaagatggtttccacg
cgcagcctgcaattaacggtgaagaagtccggaagcgggaccacgcgcacggtcaaggcg
cttgaaggccagctactcatggtcaaggatggcgaacgcactgccatctcttcacgtgtc
gccgagcttaaccagatcatgccccagtatctcggcatagcacccgccatccttgagtat
gtcatattctgccaccaggaagagagcatgtggcctatgagtgagccttcaactctgaag
aagcggttcgatgcaatattcgaggctctaaaatacaccaaggccattgaaaacatcaag
attctccagaagcggcaaaaggaagagctaggcaagttgaggattatcgagcagcactct
aaagaagacaaggagaagggcgagaaggctgagaagcgggcaaccgatctctacgatgag
atcgaagagcttcgcactcaaatcaatgctcttgaagatggtatcaaagatgccgccaca
cgctcgcaggaagcttgggaccatgctgctgagttccagaacattgtgtctagactgaag
gggaaacgtattgaggcctcggctaccgaaagaaacgtggaagagctacggcaaaatatc
cgggaaatgacggatacagacgaggaactacaagcacaccttgaccagtatgaggaacgc
gtccaactttacgagaaagaccgccaagagaagatccagcgctacaacgagatcacccaa
gctacaaagcgtattcgcgcctctcttggcaccaagcagaatgatgttggaaagcaccaa
gccaacaaagacgcttatgaacgccaactcaaagccagggcgagccttatcaaggagact
gcacatcgtcacagcatccgcggcttcgacctcgagatcaacgatgagcaagtacgtgac
ttcatggaacgtatcaacaagatggcaaaagaccagcagactgcattgcaacgtgccagg
aaacaaaagcaagatgaacttcaggttgccaacagggagcttaaccaagttaatcagcgc
aagagcgcgcttgaggccagcaaaaacaaccacaaatctcagatcgctggcaatgagaag
aaaatgtcagatctgcaagaaaatttcaacaagatcgacgttgatgaaggcagcaaagct
aggcttgagtcgtccctggaggatatcaacagacgtctggacaaggccaaagcagaccgc
gctgcagcgcattgggaagagaagatcagtgaagcgaatggccaaatacgcgagttggag
gacgagaaggagaaattggacgccgagatggtggaagcgacgcgcagagctggtgattcg
gcgcagctggactatgtgcggaaagaagtaaaggccaggcagacaagtcttgccaagaac
accggcacgcatcgggagccgatttctcgcattatcggacagacctgggagccaagcaca
cttgagacggacttcaatgcagcccttcaacagagatccggcgagctccgggatacggaa
ctgcagcgggatggaacaactcgtgagcttgaacaaatccagttcaagttgaccacagcc
aagaatgatctcagcaagaaacgcgaagtgcttaaaacctctgaggaacgcgttgatgaa
gctctggacgaggatgagacaccagacgggttccctgaggccctgagcacagcggaggcg
aacgttgacgtggcaaagaatgacgcaaccggctttggacacatggggaagttctacaag
gattgtctatcgaccctcgaaaatcacaacatctgccaattgtgccgtcgcggtttcaag
aaggattccgagaagtcgacattccagaaaagacttgaagaccgaattcaagaagctgtg
aaagacagctataaagacatattgaaagaacagcaggaggagcttgaaaagctacgcgaa
gcacagcctttctacgacacttgggttcgactcaaggacagcgagatccctgcactagag
gcagcctgccgtgacctggaatcgaaacgtgatgatctcttgagggtcatcgaaggacag
gatcagcgcgtcaacgaacgccaggagtcgaagagagatgttgagttcatgacgaaggat
gtccaagccatcatccaggattacaaagccatccgtacctttgaggaacagatcaaagag
ctgtcggcgaagcaggcgcatctgggagtcttcagaggtgttgagaagatccaggatgac
ctcaagaaaattaacgaccagttaaaggccaacaagaacaagttggcgcagctgacgact
gagaaggagcgagctcgcgagaccatatcgcatcttgagctcgagtctaaggatattggc
gccaaggtcaccgatgcagaatatgcgctcagggaaaagaacagtctgcacacccagatt
caagatgtaagatctcgaaccgctgagcaccgggaatcgatacgtcaaaccgatcaagac
cttcaaaccctcattccagatgtcgagcaagctcaagccaagtacgacgcgattgagcag
aggggtgcgcaaaaggaacatgaactgcaagcggcctacgataataccactgagagcctc
cgcagcctgaaaaatgccaatcaggagatcagtgcctaccttgagagtggtggcctgaac
caactcactcaggctcgtcgcgaaatcgaggatcttcaggaagagagccagcagatggag
atggagcagagggagatcacggccgaaaccaagaagattgacgaacagctccgcgatcac
acggagacgaaacgcgcaatcaacgacaacttgaggttccgctctgggctcaagaagctc
ggcaaactccgcgaggaggttgaggagcttgaaaagcacaatgcggaggtagacaaggat
cgctacgagcgcgaggccagcaagtggcagcacgagcggaacaggctgagtgcagagcaa
gccagtctcattggcacggtgagatctaaggacgaccagttgaagcagtatgccgcggac
tgggagaccgactacaagcatgccgcgcagaactacaaggaagcacatatcaaggtcgaa
acaacaaaggcagctattgaggaccttgggcgctacggcggtgctcttgacaaggctatt
gtcaagtaccacagcctcaagctcgaagagatcaaccgcatcattgaggagctttggaaa
aagacttatcagggcactgacatcgacacgatcttgatcagatcggaaaacgagtcgagc
agcaagtcgcgcagctacaattaccgggtggtgatggtcaagcaggacgctgaaatggac
atgcgtggccgttgcagtgctggccaaaaggtgctcgcaagcatcatcatccgactggct
ctggcggagtgcttcggcatcaactgcggacttattgcactggatgagccaacgacgaac
ctggaccgggacaacatccgagctctggcagagtcgctagccgaaatcatccgtgtgcgt
cgccagcagagcaacttccagctcattgtcatcactcacgacgaagagttcctgcggtac
atgcagtgcgcggacttcagtgattactactaccgcgtctctcgcaatgagaagcagaag
agcaccattgagaaacagtcgatagcggaggtcttgtaa
DBGET
integrated database retrieval system
