Nicotiana tomentosiformis: 104117534
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Entry
104117534 CDS
T05025
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03030
DNA replication
nto03410
Base excision repair
nto03420
Nucleotide excision repair
nto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104117534
03410 Base excision repair
104117534
03420 Nucleotide excision repair
104117534
03430 Mismatch repair
104117534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nto03032
]
104117534
03400 DNA repair and recombination proteins [BR:
nto03400
]
104117534
DNA replication proteins [BR:
nto03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104117534
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104117534
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
PTCB-BRCT
AAA_30
AAA_22
AAA_19
BRCT_2
AAA_5
RuvB_N
AAA_assoc_2
AAA_14
nSTAND3
AAA_16
DNA_pol3_delta
NTPase_1
AAA_18
Zeta_toxin
SurA_N
Sigma54_activ_2
PHTB1_C
Motif
Other DBs
NCBI-GeneID:
104117534
NCBI-ProteinID:
XP_009626889
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MSDIRKWFMKQHDKGTGNGSMSKNAPEKPSAEKPSPENLVQEGQETAGRRKTSKYFATDK
VKAKEEKVEAVSAKRKAQNAGGSSSVNEKPPAAKRIHKAEDDDDFVLPASAMGSRGATPT
KKSASGSGRGPARKSVISDESDDDLKDTKSDLKPTGRGRGGRAAQTGGKGIPLDESDDDA
SADKDTKSGGRGRGGKGPSAAPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGASNC
LAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIEGRKSSKAKELG
TAFLTEDGLFNMIRSSKKSKPATQPESKKSVDTVVSPAKRNSQNTSDGTGSTATKILAAK
ELTPSASPAKRKGQAKESSLPWTEKYRPKAIVDIIGNKSLVEQIQRWLESWDEHFLNAAS
KGKGKKQNDSGAKKAVLLSGMPGIGKTTSAKVVSQLLGFQTIEVNASDSRGKADSKIEKG
IGGSTANSIKELVSNESLGANIGRSHHQKTVLIMDEVDGMSAGDRGGVADLIASIKLSKI
PIICICNDRYSQKLKSLVNYCLPIVFRKPTKQQYTNEYMQYTYASQCTFHSVLLWTRSKL
PLAPMAKRLKQVANAEGLQVNEIALEELAERVGGDMRMALNQLQYMSLSKSVIQYDDIRQ
RLLSSSKDEDISPFKAVELLFDFNAKNLKIDRRIDLSMSDLDLVPLLIQENYLNYKPSSL
GKDDDGLKRMSLIARAADSIANGDLINVQIRRYQQWQLSPAGCLSSCIIPASLLHGQRQT
LEQGERNFNRFGGWLGKNSTMGKNYRILEDLHVHLLASRESYLGRANLRLDYFTLLTKKL
TDPLKLLPKDEAVENVVDFMDSYSISQDDFDNIVEISKFKGHPNPLDGVQPVVKAALTRA
YNKGSKSRVIRTADLISLPGIKKAPKKRVAAMLEPLDEGLAEENGEAIAEDEENSSETED
IDVEKKLESDLQSLNLKGIQVNVDLKGAGGKKPSAGRGRGSSSSSREKGGAESSGKRGGR
GSGATKRKR
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatatcagaaaatggttcatgaagcagcatgacaaaggtacgggtaatgggagc
atgtccaagaatgctccagaaaagccttcagcagaaaagccttctccagaaaacctggta
caagagggacaagagactgccggcagaaggaaaactagtaaatattttgctacagacaag
gtgaaggcaaaagaagaaaaagtagaggcagtatcagcaaaaagaaaagctcaaaatgct
ggtggaagttcatcagttaatgagaagccaccagctgcgaaaagaattcacaaagctgag
gatgacgatgactttgtactgcctgcatctgcaatgggatccagaggtgccactcccacc
aaaaagtcggcaagtggctctggaaggggacctgcacggaagtctgtgatcagtgatgaa
agtgacgatgatcttaaggatacaaaatctgatctcaaacctactggaagagggcgtggt
ggacgagcagctcagactggtggaaaaggcatccctcttgatgaaagtgatgatgatgcc
tcagctgataaggacaccaaatctggtggacgaggccgtggtggtaaaggaccatctgca
gcaccaagtggtggacgaggcagaggcggtggaggacggggcggtttcatgaattttggt
gaaagaaaagaccctcctcacaagggggaaaaggaagttcctgaaggtgcctcaaactgt
ttagctggtttgacttttgtaattagtggaactctggacagtttagaaagagaagaagct
gaggatttgattaaacgccatggtggtcgtgtcacaggatctgttagcaagaaaacgaat
tatcttttatgcgatgaagacatcgagggacggaaatcctctaaagccaaggaactcgga
actgcatttctcactgaggatggtttgttcaatatgatccggtcatcaaagaaatcaaaa
ccagctacacaacccgagtcaaagaaatcggtggacactgttgtttctcctgcaaagaga
aattcacaaaatacaagtgatggaactggaagcactgccacaaagattttagctgccaaa
gaattgacacctagtgcatctcctgccaagaggaaaggccaagctaaagagtcttcacta
ccatggacagaaaaatacaggcccaaagctattgtagacataatagggaataagtcactg
gtagaacagattcagcgttggctggagagctgggatgagcattttctaaatgcagctagt
aaggggaaggggaaaaaacagaatgactctggtgctaaaaaggcagttctgttgagtggt
atgccgggtatagggaagactacatcagcaaaggtggttagtcagctactgggtttccaa
actatcgaggtaaatgctagtgatagtcgtggaaaggctgattcaaaaattgagaaagga
attggtggtagtactgctaattccataaaagaactagttagcaatgaatcactaggtgct
aatattggcagatcgcaccatcagaagactgttctgattatggatgaggttgatggcatg
tctgctggagatagaggtggtgttgccgatcttattgctagcatcaagttatccaaaatt
cctattatctgcatttgtaatgatcgctacagtcagaaattgaagagccttgtcaattat
tgcttaccaattgtcttccgaaaaccgactaaacagcagtacactaatgaatatatgcaa
tatacttatgctagtcagtgtaccttccacagtgtcctgttatggacaagatccaagcta
cccttagctccaatggcaaagaggttaaagcaagtggcaaatgctgaaggccttcaagtc
aatgagattgctcttgaggaattggcagaacgtgttggtggcgatatgcgtatggctcta
aatcaattgcaatacatgagtctctccaagtctgtgatccaatacgatgatataagacag
cgccttctaagcagttcaaaggatgaagacatctcacccttcaaagctgtcgaactgctg
tttgattttaatgccaagaacttgaaaatagatcgaagaattgatctaagtatgagtgac
ctagatcttgtcccgcttcttatacaggagaactatctcaattacaagccaagttctctt
ggcaaagatgatgatggtttaaagcggatgagcctaatcgcgcgtgctgctgactctatt
gcaaatggtgatttaataaatgtacagattcgtagataccagcagtggcaactatctcca
gctggttgcctttcgtcttgcataattcctgcttcgttgttgcatggacagaggcagact
cttgagcagggagaacgcaactttaataggtttggtggctggctaggaaagaactctaca
atgggaaagaattaccgaattttggaggacttgcatgttcacctactcgcttctcgtgaa
tcatatttgggaagggcaaacctgagacttgactactttactcttcttacaaagaagttg
acagatccattaaaactgctacctaaggatgaagctgtcgagaacgttgtggatttcatg
gattcatactctataagccaggatgacttcgataatattgtggagatatcaaaattcaag
ggacatccaaatccactggatggtgttcagcctgttgtgaaagctgcactgacaagggca
tacaacaaaggaagcaaatcacgtgttattcgcacagcagatttaatatcccttcctgga
attaaaaaagctcccaagaagcgggttgcagcgatgctggagccactagatgaaggctta
gctgaagaaaatggtgaagcaattgctgaagatgaagagaactcatcagagacagaggat
atagatgttgagaaaaagttggagtcagatcttcagagtctcaatttgaagggaatccaa
gtaaatgtagatctgaagggtgctggtggaaagaagccgtctgctggaagaggaagagga
agttctagtagcagcagggagaaaggaggcgctgaatcctcgggcaagagaggtggccgg
ggttctggagctaccaagagaaagaggtga
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