Niallia taxi: NQZ71_10025
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Entry
NQZ71_10025 CDS
T09453
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ntx
Niallia taxi
Pathway
ntx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ntx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NQZ71_10025 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ntx03400
]
NQZ71_10025 (ligD)
Enzymes [BR:
ntx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NQZ71_10025 (ligD)
DNA repair and recombination proteins [BR:
ntx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NQZ71_10025 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WOD61176
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All DBs
Position
complement(2019189..2020397)
Genome browser
AA seq
402 aa
AA seq
DB search
MKYTASFTITEYNLMDKLFSVGVADNGIIKNVGQFSEGMTKEESTALLSIVQKNARTVGK
VILVEPGICVELEFSSFEDEKIIQPVFVQFLFQKSWQECTYEQLLQNIGLDKLTITNPDK
PLFPDNNVRKIDFINYLTLAEEKILPFLQNRLLTVIRFPHGLFGESFYQKQCPDYAPAFV
ETSWKEDINYIICNNKQTLLWLGNQLAFEFHIPFETVLSDSMPSEIVFDLDPPSRDHFFM
AIKAAQILKQVLDGLKLISFIKISGNKGIQVYIPLPEKTYTYDEARIFTEFIANYMITIE
PELFTIERLKKNRHNRLYIDYIQHSEGKTIIAPYSVRGNEGGYVACPIFWDELTNNLSPK
AFTMESVSERLKNREDPFQSYFATKEKQSLKEVLHFIQSNHT
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatactgcttcctttacgattacagagtataaccttatggataagctgttttcg
gtaggtgttgcggataatggcatcatcaaaaatgttggacagtttagtgaaggcatgaca
aaagaagaaagtactgccttactaagcattgtgcaaaaaaatgcacggacagtgggtaaa
gtgatcttggttgaaccaggtatatgtgttgagcttgaattctcttcgtttgaagacgaa
aaaattattcaacctgtatttgtacaatttcttttccaaaaaagctggcaggagtgcact
tatgaacagctactgcaaaacatcggacttgataaactgactatcaccaatccagataaa
ccattatttcctgataacaatgtacgcaaaatagatttcatcaactatctaacattggca
gaagagaaaatactgccttttttacaaaatcggctactgacagttatccgtttcccgcat
ggattgttcggtgaatctttttatcaaaagcagtgtcctgattatgcaccagcatttgtt
gaaacaagctggaaggaagatattaattatattatctgcaacaataaacaaacactgctt
tggctgggcaatcagcttgcattcgagtttcacataccatttgaaaccgtcctgtctgac
agtatgccttcagaaattgtgtttgatttggacccgccatcacgagatcatttctttatg
gcaattaaagctgcacaaatactcaagcaggttctcgatggattaaagcttatttctttt
ataaaaatatctggaaataaaggcattcaagtatatattccacttccagaaaaaacttac
acgtatgatgaagcaagaattttcactgaatttattgcaaactatatgataacaatcgaa
ccagaattatttacaattgagcgcttgaaaaaaaatcgccataaccggctttacatcgat
tatatccagcatagcgaaggaaaaacgatcattgctccctattctgttagaggaaatgaa
ggtggatatgtcgcttgcccgatattttgggatgaactcacaaataatttatcgccaaaa
gcctttacaatggagtctgtgtcagaacgactgaaaaacagggaggatcccttccaatct
tattttgcaacgaaggaaaagcaatcattaaaagaagtccttcattttatccagtcaaac
catacatga
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integrated database retrieval system