KEGG   Nocardia yamanashiensis: LTV02_25175
Entry
LTV02_25175       CDS       T07935                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
nya  Nocardia yamanashiensis
Pathway
nya00010  Glycolysis / Gluconeogenesis
nya00020  Citrate cycle (TCA cycle)
nya00260  Glycine, serine and threonine metabolism
nya00280  Valine, leucine and isoleucine degradation
nya00310  Lysine degradation
nya00380  Tryptophan metabolism
nya00620  Pyruvate metabolism
nya00630  Glyoxylate and dicarboxylate metabolism
nya00640  Propanoate metabolism
nya00785  Lipoic acid metabolism
nya01100  Metabolic pathways
nya01110  Biosynthesis of secondary metabolites
nya01120  Microbial metabolism in diverse environments
nya01200  Carbon metabolism
nya01210  2-Oxocarboxylic acid metabolism
nya01240  Biosynthesis of cofactors
Module
nya_M00009  Citrate cycle (TCA cycle, Krebs cycle)
nya_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
nya_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
nya_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:nya00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    LTV02_25175 (lpdA)
   00020 Citrate cycle (TCA cycle)
    LTV02_25175 (lpdA)
   00620 Pyruvate metabolism
    LTV02_25175 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    LTV02_25175 (lpdA)
   00640 Propanoate metabolism
    LTV02_25175 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    LTV02_25175 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    LTV02_25175 (lpdA)
   00310 Lysine degradation
    LTV02_25175 (lpdA)
   00380 Tryptophan metabolism
    LTV02_25175 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    LTV02_25175 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nya04147]
    LTV02_25175 (lpdA)
Enzymes [BR:nya01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     LTV02_25175 (lpdA)
Exosome [BR:nya04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   LTV02_25175 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox FAD_binding_3 Pyr_redox_3 FAD_oxidored FAD_binding_2 GIDA NAD_binding_8 Thi4 Lys_Orn_oxgnase DAO HI0933_like 3HCDH_N ApbA AlaDh_PNT_C
Other DBs
NCBI-ProteinID: UGT39356
LinkDB
Position
complement(5350099..5351502)
AA seq 467 aa
MTSHYDVVVLGAGPGGYVAAIRAAQLGLRTAIVEQKYWGGVCLNVGCIPSKALLRNAELA
HIFTKEAKTFGISGQASFDFGAAFDRSRKVADGRVKGVHFLMKKNKIDEFDGAGTFVDAN
TISVALSKGGSETITFDNVIIATGTVTKLLPGTSLSANVVTYEEQILTRDLPGSILIVGA
GAIGMEFGYVLKNYGVDVRIVEFLDRALPNEDADVSKEITKAYKKLGITITTGAAVQSID
DDGSKVTVAIKDNKTGSIETVTVDKVLQAVGFAPRIDGYGLDKTGVQLTDRGAIAIDNVM
RTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLPIDDYRMMPRATFCQPQVAS
FGLTEEQARAEGYDVKVATFPFTANGKAHGLGDAQGFVKLISDTKYGELIGGHLIGPDVS
ELLPELTLAQKWDLTVNELARNVHTHPTLSEALQEAIHGLAGHMINF
NT seq 1404 nt   +upstreamnt  +downstreamnt
gtgacttcccactacgatgtcgtcgttctcggcgctggtcccggcggttacgtcgccgcg
atccgcgccgctcaactcggcctgcgaacagcgatcgtcgagcagaaatactggggtggc
gtgtgcctgaacgtgggctgcattccctccaaggcactgctgcgtaacgccgaactggcc
catattttcaccaaggaagccaagaccttcggcatttccggccaggcgagcttcgacttc
ggcgcggcgttcgaccgcagccgcaaggtggcggacggccgcgtcaagggcgtccacttc
ctgatgaagaagaacaagatcgacgagttcgacggtgcgggcaccttcgtcgatgccaac
acgatctccgtggcgctgagcaagggcgggtccgagaccatcacgttcgacaacgtgatc
atcgcgaccggcaccgtcaccaagctgctgcccggcacctccctgtccgccaatgtggtc
acctacgaggagcagatcctcacccgtgacctgcccggctcgatcctgatcgtcggcgcg
ggcgccatcggcatggagttcggctacgtcctcaagaactacggcgtggacgtgcgcatc
gtcgaattcctcgaccgcgccctgccgaacgaggacgccgacgtctccaaggagatcacc
aaggcgtacaagaagctcggcatcaccatcaccaccggtgcggccgtgcagtccatcgac
gacgacggctccaaggtcaccgtcgcgatcaaggacaacaagaccggttccatcgagacc
gtcacggtcgacaaggtgctgcaggccgtcggcttcgccccgcgcatcgacggctacggc
ctcgacaagaccggcgtgcagctgaccgatcgcggcgccatcgccatcgacaatgtcatg
cgcaccaatgtcccgcacatctacgccatcggcgatgtcaccgcgaagctgcagctcgcg
cacgtcgcggaggcgcagggcgtggtcgcggccgagaccatcgcgggcgcggagacgctg
cccatcgatgactaccgcatgatgccgcgcgccaccttctgccagccgcaggtcgcctcg
ttcggcctgaccgaagagcaggcgcgcgccgagggttacgacgtcaaggtcgcgaccttc
ccgttcaccgcgaacggcaaggcgcacggtctgggcgacgcgcagggcttcgtgaagctc
atctccgataccaagtacggcgaactcatcggcggccatctcatcggccccgatgtctcc
gaactgctcccggagctgaccctggcccagaagtgggatctcacggtcaacgagctggcc
cgcaacgtccacacccacccgacgttgagcgaagccctccaggaagccatccacggcctc
gccggccacatgatcaacttctga

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