Ornithorhynchus anatinus (platypus): 100077731
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Entry
100077731 CDS
T01045
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oaa
Ornithorhynchus anatinus (platypus)
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oaa03016
]
100077731 (RTCB)
Enzymes [BR:
oaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
100077731 (RTCB)
Transfer RNA biogenesis [BR:
oaa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
100077731 (RTCB)
Prokaryotic type
tRNA splicing ligases
100077731 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
100077731
NCBI-ProteinID:
XP_001510104
Ensembl:
ENSOANG00000005524
UniProt:
F6X5L9
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All DBs
Position
14:complement(41674460..41691935)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELLYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttacaacgatgagctcctctacctggacaagatccacaagaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggtggaaggagtattctatgtgaacgat
cctctagagaagctcatgtttgaggagttaagaaatgcctgccgaggtggtggtgctggt
ggcttcctgccggccatgaagcagatcggcaacgtggccgccctgcccgggatcgttcac
cgatctattgggcttcccgacgtccactctggttatggatttgccattgggaatatggcc
gcctttgacatgagtgacccagaagcggtggtgtccccaggtggcgtcggatttgatatc
aactgtggcgtccgcttgctgagaaccaacttggatgaaagtgacgtccagccggtgaag
gagcagctcgcccaggccatgtttgaccacatccccgtcggggtgggatctaagggggtg
atccccatgaatgccaaggacctagaagaggccctggagatgggtgtggactggtcctta
cgagagggctatgcctgggccgaggacaaggagcactgtgaggagtacggacggatgctg
caagctgaccccaacaaggtgtccgcacgggctaagaagagaggcctgccccagctaggg
accctgggagcgggaaaccactatgccgaaatccaggtggtggatgagatttttaacgag
tatgccgccaaaaaaatgggcatcgaccacaaagggcaagtgtgcgtgatgatccacagc
ggcagcagaggtctgggccatcaggtcgctacagatgccctggtggctatggaaaaggct
atgaaacgggacaagatcatagtgaatgaccgccagctggcctgcgcccgaatctcctct
cccgagggacaggactacctgaagggaatggcggccgctggcaactacgcctgggtcaac
cgctcttccatgactttcctaacccgacaggcctttgccaaagtcttcaacacaacccct
gatgacctggacctacatgtgatttatgatgtatctcacaatattgccaaggtagaacag
catgtggtggatggaaaagagcgaactcttctggtacacaggaaagggtccaccagggct
ttccctcctcaccatcccctcattgctgttgattatcagctgaccggacagcccgtgctg
atcggtgggaccatggggacctgcagctatgtactcaccggcaccgagcagggcatgacc
gagaccttcggaacaacctgccacggagctggccgtgcactgtcccgagcaaaatctcga
cgaaatttggacttccaggacgttttagataaactggcagacatgggaatcgcgatccgc
gttgcttcacccaaactggtgatggaagaggctccggaatcctataaaaacgtcacagat
gtggtgaatacctgtcacgatgccggcattagtaagaaagccattaaactgagacctatc
gctgttatcaaaggctag
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