Octopus bimaculoides (California two-spot octopus): 106868561
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Entry
106868561 CDS
T04127
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03022
Basal transcription factors
obi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106868561
09124 Replication and repair
03420 Nucleotide excision repair
106868561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106868561
03400 DNA repair and recombination proteins [BR:
obi03400
]
106868561
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106868561
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106868561
DNA repair and recombination proteins [BR:
obi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106868561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
SNF2-rel_dom
SesA
nSTAND3
AAA_11
Motif
Other DBs
NCBI-GeneID:
106868561
NCBI-ProteinID:
XP_052833174
EnsemblRapid:
LOC106868561
LinkDB
All DBs
Position
27:13643974..13686242
Genome browser
AA seq
693 aa
AA seq
DB search
MRLNIDGLLVYFPFDYIYPEQYLYMTELKKSLDAKGHCALEMPSGTGKTVSLLSLITAYM
RCHPLDVTKLIYCSRTVPELEKVVEELKVVMKYYEKETNEKPNILGLALSSRKNMCINQE
VLSHRTGKVIDSKCLALTASYVRKQHKYNEKIPICEFYEEFDAHGRSTPMEPGVYNLDDL
KDYGRKRKRCPYFFTRYMIQQANVIIYSYYYLLDPKIAAIVSNELNKNSVVVFDEAHNID
NVCIESMSVTINRQILDRCSNSIEKLKRHVEKIREIDENKLKEEYHKLVEGLKDARIAKE
TDVILSNPVVPTEILEEAVPGNIRNAEHFLAFMKRFVEFLKTRLRIQHVVSESPPSFLKD
CSQKVCIERKPLRFCSERLQSLMRTLELTDIDDFSSLNLISNFATLVSTYAKGFIIIIEP
FDDRTSTYTNPVMHFNCMDASIAIKPVFDRFQTVVITSGTLSPLEMYPRILDFHPVIMAT
FSMTLARPCILPIVSVPVSSFYFIKLDSAVIRNYGNLLVDLCRIVPDGIVGFFTSYSYME
TIVASWYETGIIDSLQKNKLLFIETQDAAETSLALFNYQKACENGRGAVLLSVARGKVSE
GIDFEHHFGRAVIMFGVPYVYTQSRILKARLEYLRDNYQIRENDFLTFDAMRHAAQCVGR
VLRGKTDYGIMVFGDKVNMLLFFIFPNYFFPNV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaggctaaacatcgatgggttgttggtttactttccatttgattacatctaccctgaa
caatacctttatatgaccgagttgaagaaaagccttgatgctaagggccattgtgcattg
gaaatgccgtcaggaactggcaaaactgtatcactgctcagtctcattacagcttatatg
aggtgccaccctttagatgtcacaaaattaatatattgttccagaactgttccagaattg
gagaaggtggtggaagaattaaaggttgtcatgaaatattatgaaaaagagacaaacgag
aaaccaaatattcttggcttggccttgtcttccaggaagaatatgtgcatcaatcaggag
gttctctctcaccgaactggcaaagtaattgatagtaagtgtctggcattaacagcatcc
tatgtccgtaagcaacacaaatacaatgagaagattccaatctgtgagttttatgaagaa
tttgatgctcatggcagatcaactcctatggaaccaggtgtatataacttggatgattta
aaagattatggccgaaagagaaaacgctgtccctatttctttacaagatatatgatccag
caagccaacgtcatcatctacagttattattaccttctcgatccaaaaatcgcagcaatt
gtctccaatgaattaaacaagaactctgtagttgtctttgatgaagcacacaacattgat
aatgtctgtatagagtctatgagtgtgacaattaaccgacaaatcctggacagatgttcc
aatagtattgagaagttaaagagacatgtagaaaaaatccgagagatagatgaaaacaaa
ctaaaagaagaataccacaaactggtggaaggtttgaaggatgcaagaattgccaaagag
actgatgtgatcttatccaatccagtggttcctaccgaaattcttgaagaagctgtgcct
ggaaacattcggaatgcagaacatttcttggcttttatgaagcgttttgtggaattcttg
aaaaccagacttcgtatccagcatgtcgtttccgagagtccaccttccttcctcaaagat
tgttctcagaaagtttgtattgaaaggaaacctctcagattctgcagtgaacgtcttcag
tctttgatgagaactctagaactgaccgacattgatgacttctccagtctgaacctcata
tctaactttgccactctggtcagtacttatgctaaaggtttcataataatcattgaacca
tttgatgacaggacctcgacatacactaacccagtgatgcacttcaactgtatggatgcc
tctatcgctattaaaccagtctttgacagattccagacagttgttatcacatcagggacg
ttgtcccctcttgagatgtaccccagaatcttggacttccatccagttataatggcaaca
ttctctatgacgttagcaaggccctgtattcttccaattgtaagtgttccagtatcttct
ttctatttcatcaaactagattcagctgtcatacggaattacgggaatcttttggtggat
ctctgccggattgtccctgacggaattgtgggtttttttaccagttattcttacatggaa
acgattgttgcttcatggtatgaaacgggaattattgacagtttacaaaagaacaaactt
ttattcattgaaactcaggatgcagccgagaccagcctggctttgtttaattaccagaag
gcctgtgaaaatggacggggtgctgtcttactttctgtagccagaggcaaagtttcggag
ggaattgattttgaacaccatttcgggagagctgtgattatgtttggtgttccttatgtc
tacactcagagcagaatcttaaaggcacgactggaatatctccgagacaactaccagatt
cgcgagaatgacttcttaacatttgatgccatgagacatgcagctcagtgtgttgggaga
gttcttcgtggtaaaacagattatggaatcatggtttttggagataaagtaaatatgctt
ttgttttttatctttccaaattatttcttccctaatgtgtaa
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