Oryctolagus cuniculus (rabbit): 100342324
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Entry
100342324 CDS
T03373
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
ocu05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100342324
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100342324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocu03021
]
100342324
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100342324
Transcription machinery [BR:
ocu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100342324
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100342324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
100342324
NCBI-ProteinID:
XP_008269993
LinkDB
All DBs
Position
19:complement(54286196..54294583)
Genome browser
AA seq
191 aa
AA seq
DB search
MQEVIAGLERFTFTFEHDVEMQRGTGLLPFQGMDKSSSAVCNFFPKGPCAKETLCPFRHE
HGEKTVVCKHWLRGLCKKGDHCRFLHRYDATRMPECYFYSTFGDCNNKECSFLHVKSAVK
PRDCPWYEQGFCKNGPLCKYRHTRRTMCLRYLAGFCPEGPTCQFAHPKINLAFNPSCRQG
TGPSSGLGVRR
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaggtcattgccggcctggagcgcttcaccttcaccttcgagcacgatgtggag
atgcagaggggcacggggctcctgcccttccagggcatggacaagtcaagttcagctgtg
tgcaacttcttccctaagggcccgtgcgccaaagagacgctctgccccttccggcacgag
cacggggagaagacggtggtgtgcaaacactggttgcggggcctgtgcaagaagggtgac
cactgccggttcctgcaccgctacgacgccaccaggatgcccgagtgctacttctactcc
acgttcggtgactgcaacaacaaggagtgttccttcctccacgtgaagtcggctgtcaag
ccccgggactgtccttggtacgaacaaggtttctgcaagaatggccccctatgtaagtac
cgccacacccgcagaaccatgtgtctccgctacctcgctggcttctgccccgagggaccc
acatgccagtttgcccatcccaagatcaatcttgcattcaacccgagttgcaggcaggga
acagggcccagctcaggacttggggtccgacgttga
Oryctolagus cuniculus (rabbit): 100346062
Help
Entry
100346062 CDS
T03373
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X2
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
ocu05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100346062
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100346062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocu03021
]
100346062
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100346062
Transcription machinery [BR:
ocu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100346062
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100346062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-C3H1
zf-CCHC_3
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
100346062
NCBI-ProteinID:
XP_002721910
Ensembl:
ENSOCUG00000002437
LinkDB
All DBs
Position
6:complement(28341855..28355399)
Genome browser
AA seq
244 aa
AA seq
DB search
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP
LPQQTQPPSKQRAPQVIGVMQSQSSSAGNRGPRPLEQVTCYKCGEKGHYANRCTKGHLAF
LSGQ
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagatcatcgctagcgtggaccacattaagttcgacttggagatcgcggtggag
cagcagctcggggcgcagccgctgcccttccccggcatggacaaatccggagctgctgtc
tgcgagttcttcctgaaagctgcctgtggcaaagggggcatgtgcccattccgccacatc
agcggcgagaagacagttgtgtgcaaacactggctgcgtgggctgtgcaagaaaggggac
cagtgcgagttcctgcacgagtacgacatgaccaagatgcccgagtgctacttctattcc
aagttcggggagtgcagcaacaaggagtgccccttcctgcacatcgaccccgagtccaag
atcaaggactgcccctggtatgaccgcggcttctgcaagcacggtcccctgtgcaggcac
cggcacacgcggagagtcatctgtgtgaattacctcgtgggattctgcccggagggaccc
tcctgcaaattcatgcaccctcggtttgaactgcccatgggaaccacggagcagccccca
ctgccgcagcagacacagcctccaagcaagcagagagccccgcaggtcatcggggtcatg
cagagtcaaagtagcagtgctggcaaccggggaccccggccgctggagcaggtcacctgt
tacaagtgtggtgaaaaaggacactacgccaacagatgcaccaaagggcacttggccttt
ctcagtggacagtga
DBGET
integrated database retrieval system