Oryctolagus cuniculus (rabbit): 100347292
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Entry
100347292 CDS
T03373
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X3
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100347292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocu03021
]
100347292
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100347292
Transcription machinery [BR:
ocu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100347292
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100347292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
100347292
NCBI-ProteinID:
XP_002708710
Ensembl:
ENSOCUG00000004462
LinkDB
All DBs
Position
1:complement(147521295..147548313)
Genome browser
AA seq
1553 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSASTKLHVSQIPPMAVKVPHQVPVQPEKSRPGPSQIQDLKGTNRDPRLNR
MSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVSLEKNSSKQEKSKSGEKITKKELDQLD
SKSKSKSKSPSPLKNKFSHTKDLKNQESESVRLSDMNKRDPRLKKHLQDKTDGKDDDGKD
KRKTAEKKDKDEHTKSSEHRLVGSRNKIINGIVQKQDAITDESEKQGTKPGRSSTRKRSR
SRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSREE
RNAKRSTKQDVRDPRRMKKTEEERPQENVNQHSTKSGAEPKENIENWQSSKSTKRWKSGW
EENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASKR
ELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSD
KPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIFEGPNKLSPRIDG
PPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGAPLRFEGPIGQAG
GGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGALRFEGHRGQPVGGIRFEGPHGQPVGGL
RFDSPRGQPVGGLRFEGGHGPAGAAIRFDGPHGQPGGGIRFEGPLLQQGVGLRFEGPHGQ
SVGGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEG
PLGQGGPRFEGCHALRYDGQPGQPSLLPRIDGLHGQPGPRFERTPGQPGPQRFDGPPGQQ
IQPRFDGVPPRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLESVSFNQTGPYNDPPGSA
FNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQNFSNPLNRPGHYFDEKNLQSSQFGNF
GNLPGPITVGNIQASQQVLTGVGQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPDN
HLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQNEDQDVPDLTNFT
IEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHR
RWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVES
CEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENP
LNIMLNIVKNELQEPCESPKVKEEQIDTPPACTEESIATPTEIKTENDTVESV
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtgctgcaggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagaaaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagttaattca
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgccggaggaaccttcaacacctggcaccgtggtc
agctcccccagcatctctactcctccaattgttcctgatatacaaaagaatctcactcag
gaacaactaataagacagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaattggcagtttctcttagtgtt
cagcaggagacatccaatttaggtcctggatctgcatcaaccaaattacatgtttcacaa
attccgcctatggcagtcaaagttccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatcccaaattcaggatttgaaaggcactaaccgggatccccgccttaacagg
atgagccaacattcctctcatgggaaagatcaaagtcacaggaaagaatttctaatgaac
acattgaaccagtctgatattaagacaagtaaaactgtatccttggagaaaaactcatcc
aagcaagaaaaaagtaaatcaggtgaaaaaataacaaagaaagaacttgaccaattagat
tctaaatccaaatctaaatctaaatcaccatcacctttgaaaaacaaattctcacataca
aaagacttgaaaaatcaagaatctgaaagtgtaaggttgtctgatatgaacaagagagat
ccaagattaaaaaaacatcttcaggataagactgatggcaaagatgatgatggaaaagat
aagagaaaaactgcagaaaaaaaggataaagatgagcacacaaaatcgtctgaacacagg
ctggttggaagtagaaataaaatcataaatggtattgtacaaaaacaggatgcaataaca
gatgaatcggaaaaacaggggacaaaaccagggagatctagtactagaaagcgatcaagg
tcaagatcccctaaatctcggtcaccaattatacattcaccaaagagaagagatagacgg
tcacccaaacgaaggcaaaggagtatgtctccaacttcaacacctaaagctggaaaaatt
cgccaatcaggagttaaacagtcacatatggaagagtttacgccaccttccagggaagaa
agaaatgctaagagaagtaccaaacaggatgttcgtgatccgaggcggatgaaaaagact
gaagaagaacgaccacaagaaaatgtaaatcagcattctacaaagtcaggcgctgaacca
aaagagaatatagaaaattggcaaagttccaagtctaccaaaagatggaaatctggttgg
gaagaaaataaaagcttgcaacagggtgatgaacatagtaaatctcctcatctaaggcat
agggagagctggtcaagcactaaagggatcttgtcacctcgagccccaaagcaacagcat
cgattaagtgtagatgctaatcttcagattcctaaagagttaactcttgcaagcaaaaga
gagttacttcaaaagacgagtgaacgtttagcatcgggtgaaattactcaggatgagttc
cttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtgtacgagaagag
cagagatctccattcaatgatcgttttccacttaagcgacctagatatgaagattcagat
aaaccgtttgtagatagcccagcatcaagatttgcgggccttgatacaaatcagcgactt
acggccttggctgaagacagaccattatttgacggacctagtaggccatcggtaaccaga
gatggtccaaccaagatgatttttgaaggacctaataaattaagccctagaattgatgga
cctcctacaccaggttctcttcggtttgatgggtcaccaggacaaatggggggaggaggc
cctttgagatttgaaggtccacaaggtcagctaggaggtggatgtcctttgagatttgaa
ggtcctccaggaccagtaggggcacctctgaggtttgaggggccaattggtcaagcagga
ggtggtggttttaggtttgaaggttcgcctggtctgagatttgagggatccgcaggtggt
ttgcgatttgaaggaccaggaggccagcctgtgggtgctctcagatttgaggggcatcgt
ggtcaacctgtgggaggaataaggtttgagggacctcatggtcagcctgtgggtgggctt
agatttgatagtccccgaggtcagcctgtaggtggacttaggtttgaggggggtcatggt
ccagctggggctgccatcaggtttgatggacctcatggtcagccaggaggtgggatcaga
tttgagggccctttgctacagcaaggagttggattgaggtttgagggcccccatggtcag
tcagtgggtggtctgagatttgaaggacaacataatcaacttggtgggaaccttaggttt
gagggtccacatggtcaaccaggggttgggatcaggtttgaaggtcctttagttcaacaa
ggaggtggaatgaggtttgagggtccttctgtaccaggaggtggcctgagaattgaaggt
cctttgggtcaaggtggtccaagatttgaaggttgtcatgctttaaggtatgatggacag
ccaggtcagccatcactcttgccacgaattgatggattacatggtcagccgggtcctagg
tttgaaagaactcctggtcagccaggcccacagaggtttgatggaccacctggacagcag
atacaaccaagatttgatggtgtacctccaagatttgatggtccacaacaccagcaggca
tcaaggtttgatattcctcttggtcttcaaggcgcacgatttgacaatcatccttcacaa
aggcttgaatcagtgtctttcaatcagactggtccgtataatgatccaccgggcagtgct
tttaatgctccatcccaaggactgcagttccagagacatgaacaaatatttgattcacct
caaggaccaaattttaatggaccacatggccctggaaaccagaatttctcaaatcccctt
aacagacctggacactattttgatgaaaagaatcttcagagttctcagtttggaaacttt
ggcaatttacctggcccaataacagtaggaaatattcaggcctctcagcaggttctgact
ggtgttggtcagccagtagcatttggtcaaggacaacaatttttaccagttcatccacaa
aatcctggagcatttgttcagaatccctcaggagctcttcctaaggcatatcctgataat
catctcagtcaggtggatgtaaatgaattattttcaaaactgctaaaaacaggaattctc
aaattgtcccagcctgactcagctacaacacaagtaaatgaagtggctgctcagcctccc
cctgaagaggaggaagatcaaaatgaagatcaagatgttccagatctcactaattttact
attgaagagttgaaacaacgttatgacagtgttataaatcggctgtacactggtattcag
tgttattcttgtggaatgaggtttacaacatcacagacagatgtatatgcagatcacctg
gactggcattaccggcaaaatagaactgagaaggatgtgagcagaaaagtcactcataga
cgttggtactacagtttaacagactggatagaatttgaggaaatagctgatctagaagaa
cgtgcaaagagccagttttttgaaaaagtccatgaagaggttgtgctcaaaactcaggag
gctgctaaagaaaaggaatttcaaagtgtacctgctggaccagctggagcagttgagagc
tgtgaaatctgtcaagaacaatttgaacaatactgggatgaagaagaggaggaatggcac
ttaaaaaatgctattagagtagatggaaagatttatcatccatcatgttatgaagattat
caaaatacatcttcatttgattgtacaccatctcccagcaagacaccagttgaaaaccca
ttgaacattatgttgaacattgtcaaaaacgagttgcaggaaccctgtgaaagtcccaaa
gttaaggaagaacaaattgataccccaccagcttgtacagaggaaagcatagcaacaccc
actgaaattaaaacagaaaatgatacagtcgagtccgtttaa
DBGET
integrated database retrieval system
