Oryctolagus cuniculus (rabbit): 100351645
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Entry
100351645 CDS
T03373
Gene name
MSH6
Definition
(RefSeq) mutS homolog 6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu01524
Platinum drug resistance
ocu03430
Mismatch repair
ocu05200
Pathways in cancer
ocu05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100351645 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100351645 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
100351645 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100351645 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocu03400
]
100351645 (MSH6)
DNA repair and recombination proteins [BR:
ocu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100351645 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
HORMA
Motif
Other DBs
NCBI-GeneID:
100351645
NCBI-ProteinID:
XP_002709926
Ensembl:
ENSOCUG00000014615
UniProt:
G1T7S2
LinkDB
All DBs
Position
2
AA seq
1361 aa
AA seq
DB search
MSRQSTLFSFFPKTPLPNKSPGRASRDGGGARAATGASASPSGDEAWSEAGPGPRPLADS
ASSPKARNLNGGLRRSAAPAVHVSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIRQ
KGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGHFYSSKPEILRAMERADEA
LNKDKIKRLELAVCDEPSEQEEEEEEMEVAPTYTSDKSEEDNEIESEEEVQPKLQGSRRS
SRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEVSSAVGDSESEGLDSPVKVVPKRK
RMVTGNGSLKRKNSRKEMPSATKRAPGILAETKSTLSTFSAPQNSESPAQVSGGGGDDSG
RPTTWYHETLEWLKKEKRRDAHRRRPDHPDFDASTLHVPEDFLNSCTPGMRKWWQIKSQN
FDLVIFYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKV
ARVEQTETPEMMEARCRKMAHISKHDRVVRREICRIITKGTQTYSVLEGDPSENYSKFLL
SLKEKEEDSSGHTRVYGVCFVDTSLGKFSIGQFADDRHCSRFRTLVAHYPPAQVLFEKGN
LSVETKAVLKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTEKSNEESGVLLPQVLK
GMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSAT
RPGAVFSKASQRMVLDAVTLNNLEVFLNGTNGSTEGTLLEKIDTCYTPFGKRLLKHWLCA
PLCSPCAINDRLDAIEDLMAVPDKVSEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDS
RAIMYEETTYSKKKIIDFLSALEGFKTMCKIVEVVEDVVDDFKSKLLTQVVTLQTKNPEG
RFPDLTMELHRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLDYLEKQRS
RIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLIN
AEERRDLSLKDCMRRLFYNFDKNYKDWHSAVECIAVLDVLLCLANYSRGGDGPMCRPVIL
LPGENTAPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEDEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN
DAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRK
AREFEKMTQSLRLFREVCLASERSTIDAEALHKLLTLIKEL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcaccctgtttagcttcttccccaagactccgctgccgaacaagtcc
ccgggcagggcctcacgagacggcggcggtgcccgcgctgccacgggggcctccgcttcc
cccagcggggatgaggcctggagcgaggctgggcctgggcccaggcccctggcggactct
gcgtcgtcaccaaaggcgaggaacctgaacggagggcttcgcaggtcagcggcgcccgcc
gtccacgtcagttcttgtgacttctcaccaggtgatttggtttgggccaagatggagggt
tacccctggtggccttgtctggtgtacaaccacccctttgatggaacattcatccgccag
aaagggaaatcagttcgtgtccatgtacagttttttgatgacagcccaacaagaggctgg
gttagcaaaaggctgttaaagccgtacacaggttcaaaatcgaaggaagcccagaaggga
ggtcatttttatagttcaaagcctgaaatactgagagcaatggaacgcgcagatgaagcc
ttaaataaagacaaaattaagaggcttgaattggcagtgtgtgatgagccctcagagcaa
gaggaggaggaagaagagatggaggtagctccaacttacacatcagataagagtgaagaa
gataatgagattgagagtgaagaggaagtgcagcctaaattgcaaggatctaggcgaagt
agccgccaaataaaaaaacgaagggtcatttcagattctgagagtgacattggtggctct
gatgtggaattcaagccagatgctaaggaggaaggaagcagtgatgaagttagcagtgca
gtgggtgacagtgagagtgaaggcctggacagccctgtcaaagttgttcccaagcgaaag
agaatggtgactggaaatgggtctcttaaaaggaaaaattcaaggaaggagatgccctca
gccaccaagcgagcacctggcattttggcagaaaccaagagtactttgagtactttctct
gctcctcagaattctgagtcccctgcccaggttagtggaggaggaggtgatgacagtggt
cgccccactacctggtaccatgaaactttagaatggcttaaaaaggaaaagagaagagat
gcacacaggaggcggcccgatcaccccgactttgatgcatccacgctccatgtgcctgaa
gatttcctgaattcctgtactcccggcatgaggaagtggtggcagattaagtctcagaac
tttgatcttgtcatcttctataaggtggggaagttttatgaactgtatcatatggatgct
cttattggcgtcagtgaactggggctggtattcatgaaaggcaactgggcgcattctggt
tttcctgaaattgcttttggccgatactcggattccttggtgcagaagggctataaagta
gcacgcgttgaacagactgaaaccccagaaatgatggaggcaagatgccgaaagatggca
cacatatctaagcatgacagagtggtaaggagggagatttgtaggatcatcaccaagggt
acacagacctacagtgtgctggaaggtgacccttctgagaactacagtaagtttcttctt
agcctgaaggagaaagaggaagattcttctgggcacactcgtgtgtatggtgtgtgcttt
gttgacacgtcactggggaagttttccataggtcagtttgcagatgaccgccattgctcc
aggtttaggaccctagtggcacactatcctccagcgcaagtcttgtttgagaaaggaaat
ctctcagtcgaaaccaaggcagtcctgaagggctcattatcctcttctcttcaggagggt
ctgataccaggctcccagttttgggatgcagccaaaactctgagaactctcctcgaagaa
gggtattttacagaaaagtcaaatgaggagagtggggtgctgttaccccaggtgcttaaa
ggtatgacctcagagtccgattccattgggttgacaccaggagagaagagtgaattggcc
ctctctgctcttggtggttgtgtcttctacctcaaaaaatgccttattgatcaggagctt
ttatcaatggctaattttgaagaatatattcctttggattctgacatggtcagtgctaca
agacctggtgctgtcttctctaaagccagtcagcgaatggtgctagatgcagtgacctta
aacaacttggaggtttttctgaatgggacaaatggctccactgaagggaccttgttagag
aagattgatacttgctacactccctttggtaagcggctcctcaagcactggctttgtgcc
ccactctgtagcccttgtgctatcaatgatcgtctagatgccatagaagacctcatggct
gtgcctgataaagtctctgaagttgtagaccttctgaagaagcttccagatcttgaaagg
cttctgagtaaaattcacaacgttgggtctcccctaaagagccaaaaccacccagacagt
agggctataatgtatgaagaaactacatacagcaaaaaaaagataattgattttctttct
gctcttgaaggattcaaaacaatgtgtaagattgtagaggttgtggaagacgtcgtcgat
gactttaagtcaaaactcctgacgcaggtcgtaactttgcagacaaaaaaccctgaaggc
cgttttcctgatttgactatggaactgcaccgatgggatacggcctttgaccatgaaaag
gctcggaagactggactcatcactcccaaagcaggatttgacagtgattatgaccaagct
cttgctgatataagagaaaatgaacagagcctcctggactacttagagaaacaacgcagt
cgaattggctgtaggaccatagtctactgggggattggtaggaaccgctaccagttggaa
atcccagagaatttcaccacccgcaatttgccagaagagtatgagttgaaatctaccaag
aaaggctgcaaaagatactggaccaaaactattgagaagaaattggccaatctgataaac
gcagaagaacggagagacctatcactgaaggactgcatgcgacgactattctacaacttt
gataaaaactacaaggactggcattctgctgtagagtgcatcgcagtgctggatgtctta
ctgtgcttggctaactacagtcgagggggtgatggccctatgtgccgtccagtaattctg
ttgccaggagaaaacacggctcccttcttagagcttaaaggatcacgtcacccctgcatt
acaaagacattttttggagatgattttattcctaacgacattctaataggctgtgaggaa
gatgaggaagaaaatggcaaagcctattgtgtgcttgttactggaccgaatatggggggc
aagtctaccctcatgagacaggctggcctattagctgtaatggcccagatgggttgttat
gtacctgctgaagtgtgtaggctcacgccaattgatagagtgtttactagactcggtgcc
tcagatagaataatgtcaggtgaaagtacattttttgttgaattgagtgagacggccagc
atacttacacatgcaacagcacattccctggttcttgtagatgaattaggaagaggtact
gcaacctttgatgggacagcaatagccaatgcagttgttaaagaacttgctgagactatt
aagtgtcgtactttgttttctactcactaccattcattagtagaagattattctcaaaat
gatgctgtgcgtctaggacatatggcatgcatggtagaaaatgagtgtgaagaccccagt
caggagactattaccttcctctataaattcattaagggagcttgtcccaagagctatggc
ttcaatgcagcgagacttgctaatcttccagaagaggtcattcaaaagggacacagaaaa
gcgagagaatttgagaagatgactcaatcactacgattatttcgggaagtttgcctggct
agtgagaggtcgactatagatgctgaagcgctccataagttgctgactctgattaaggaa
ttatag
DBGET
integrated database retrieval system