Orrella dioscoreae: ODI_R1081
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Entry
ODI_R1081 CDS
T05133
Name
(GenBank) ATP-dependent RNA helicase Bcep18194_A5658
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
odi
Orrella dioscoreae
Pathway
odi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ODI_R1081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
odi03019
]
ODI_R1081
Enzymes [BR:
odi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ODI_R1081
Messenger RNA biogenesis [BR:
odi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ODI_R1081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Gag_p24
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SOE47854
UniProt:
A0A1C3K3L7
LinkDB
All DBs
Position
I:1185356..1186828
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AA seq
490 aa
AA seq
DB search
MTQANTPSTEAAATAVATFADCGLHPDLQKAVAETGYTVPTPIQAQAIPVVMNGRDVMGA
AQTGTGKTAAFTLPILHRLMPLANNSMSPARHPVRALILAPTRELADQVADNARKYSLHS
PLRTAVVFGGVDIGPQKLALRNGCEVLIATPGRLLDHVEQRNVNLGQVGILVLDEADRML
DMGFLPDLERIIRLLPQQRQTLLFSATFSNEIRKLARSYLHDPVEIAVAGRNATADTVTQ
IAYPLAPEAKRAAVVHLVKSRGLKQVIVFSNTKIGTGRLARELERDGVRAESIHGDKTQG
DRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYSAEDYVHRIGRTGRAGAS
GEAIALFSPNEEKLLVEIEKLIKRPVPRGSLDLPVEASSRSRHDSRGEGRGSRPERSERP
ERGASRSAGSGRGSSAPRQPVDEFFSKPYEPSAAPSGDSQASAPAANPSRAPARRALGVL
LGGGPRKSDE
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagcaaatactccctccaccgaggcggccgcaacggctgtcgccacgttcgcc
gattgcggcctgcatcccgacctgcagaaggccgtggccgaaaccggttataccgtgccg
acgcccatccaggcgcaggcaatcccggtggtcatgaatggccgcgacgtcatgggcgcc
gcccagacgggcacgggcaagacggctgccttcacgctgcccatcctgcaccgcctgatg
ccgttggccaacaacagcatgtcgccggcgcgccacccggtgcgcgcgctgatcctggcg
cccacccgcgaactggccgaccaggttgccgacaacgcccgcaaatacagcctgcactcg
ccgctgcgcaccgccgtggtgttcggcggcgtggacatcggtccgcagaagcttgcgctg
cgtaacggttgcgaagtcctgatcgccacgccgggccgcctgctggatcacgtcgagcag
cgcaacgtgaacctcggccaggtcggcatcctggtgctggacgaagccgatcgcatgctg
gacatgggtttcctgcccgacctcgaacgcatcatccgcctgctgccgcagcagcgccag
acgctgcttttctcggccaccttcagcaacgaaatccgcaagctcgcgcgctcctacctg
catgacccggtcgagatcgcggtggcgggccgcaacgccacggccgacacggtcacgcag
atcgcctatccgctggcgcccgaagccaagcgtgccgcggtcgtgcacctggtcaagtcg
cgcggcctgaagcaggtcatcgtgttctcgaacaccaagatcggcacgggccgcctggcg
cgcgaactcgaacgcgacggcgtgcgcgccgaatccatccacggcgacaagacccagggc
gaccgcatgaaggcgctggaagccttcaaggccggcgagctggaagtgctggtggccacc
gacgtggccgcgcgcggcctggacgtcgccggcgtgccttgcgtcatcaactacgacctg
ccttacagcgcggaagactacgtgcaccgtatcggccgcacgggccgtgccggcgcgtcg
ggcgaagccatcgcactcttcagccccaacgaggaaaagctgctggtcgagatcgagaag
ctgatcaagcggccggtgccgcgcggttcgctggatctgccggtcgaagcgtcctcgcgt
tcgcgccatgacagccgtggcgaggggcgcggttcgcgcccggaacggtccgagcgtccg
gaacggggcgcgtcgcgcagcgcaggcagcggccgtgggtcgtcggcgccgcgccaaccc
gtggacgaattcttctccaagccttatgaaccctcggccgccccgtcgggcgacagccag
gcgtcggcacccgccgccaacccgtcgcgcgcgcctgcgcgtcgtgccctgggcgtgttg
ctgggcggcggcccgcgcaagtcggacgagtga
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