Orrella dioscoreae: ODI_R3096
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Entry
ODI_R3096 CDS
T05133
Name
(GenBank) DNA topoisomerase IB (poxvirus type)
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
odi
Orrella dioscoreae
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
odi03032
]
ODI_R3096
03400 DNA repair and recombination proteins [BR:
odi03400
]
ODI_R3096
Enzymes [BR:
odi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ODI_R3096
DNA replication proteins [BR:
odi03032
]
Prokaryotic type
DNA Topoisomerases
ODI_R3096
DNA repair and recombination proteins [BR:
odi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ODI_R3096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
SOE50962
UniProt:
A0A1C3K206
LinkDB
All DBs
Position
I:complement(3358525..3359553)
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AA seq
342 aa
AA seq
DB search
MPQPASLDQLGDDCGLRYVEDTQPGYSRVRVNGKTFHYLDTRGKRIQDPRTIARINALAI
PPAYEDVWICPAASGHIQATGRDARGRKQYRYHPTWTEVRGANKYDQLLAFGNALPALRR
QVSRDLRAPGLTQDKVLAAVVSLLELTLIRVGSKRYAVDNKSYGLTTLTRRHTEVLGSQI
RLRFRGKSGISHDVKVKDARIARLVKRCLELPGQQLFHFLDDEGEPHAVDSGMVNAYLKR
VMGEDFTAKHCRTWAGSVMACAALQRTPWEDARQAGKRIVEVVKQVSGRLGNTPTVCRAC
YIHPGLLDAYEAGNLPAFAPAPGSPRALSADERRLLAVLAKI
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagcccgcgtccctggaccagctcggcgacgactgcggcctgcgctatgtcgag
gacacgcaacctggctacagccgggtgcgcgtgaatggcaagaccttccattacctggac
acgcgcggcaagcgcatccaggatccgcgcaccatcgcgcgcatcaatgccctggccatc
ccgccggcctatgaggatgtgtggatatgcccggccgcgagcggccacatccaggccacg
ggccgcgatgcgcggggccgcaagcagtaccgctatcaccccacctggaccgaggtgcgg
ggcgccaacaaatacgaccagttgctggccttcggcaacgcactgccggccttgcgccga
caggtgtcgcgcgacctgcgcgcgccgggcttgacgcaggacaaggtcctggcggcggtg
gtcagcctgctggagctcaccttgatccgcgtgggatcgaagcgctatgcggtcgacaac
aagtcctatggcctgaccacgctgacgcgccgccacacggaggtcctgggcagccagatc
cgcttgcgcttccgtggcaagagcggcatctcgcatgacgtgaaggtgaaggacgcgcgc
attgcgcggctggtgaagcgctgcctggagttgccgggccagcagctcttccatttcctg
gatgacgaaggcgagcctcatgccgtcgattccggcatggtcaatgcctatctgaagcgg
gtcatgggcgaggacttcaccgccaagcattgccgcacctgggctggctcggtgatggcc
tgcgcggccctgcagcgcacgccctgggaggatgcccgccaggccggcaagcgcatcgtc
gaggtcgtgaagcaggtatccggccgcctgggcaacacgcccacggtctgccgtgcctgc
tacattcatcccggcttgctcgatgcctatgaggccgggaatctgccggccttcgcgcct
gcgcctggcagcccccgcgcgctgtccgccgacgagcgccgtctgctggcggtactggcg
aaaatctga
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