Oncorhynchus gorbuscha (pink salmon): 124038215
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Entry
124038215 CDS
T07892
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124038215
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124038215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124038215
NCBI-ProteinID:
XP_046209744
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All DBs
Position
LG06:complement(62725451..62839112)
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AA seq
749 aa
AA seq
DB search
MEEDQKWGLVDKSVRMTCSDHRCKKRFWTNWKDLSGITVCIALSLLSLGFCVLVYLSTSE
LKSRILNLEKQRDTQLSSWITLEQVEPVVFGRIDQILEEKLAARLPKTRETREAPHSCVC
PPGPPGSRGKRGHNGDPGPPGPPGRSGFPGDKGTMGIPGRMGIKGYAGEKGAPGEPGLSI
IGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGLKGDLGQRGLKGVAGEPGLKGEKGICGD
YTHRQILPIPMRNMPPINPVILRRLKQGEPGAQGPPGPPGPPGPSGTSGLNGASGPPGKP
GEPGKPGKDLRLLPGMKGEPGMAGIKGDVGPAGPEGPKGLKGELGLKGDFGMPGMPGKQG
LKGEPGFPGSPGRKGQAGIPGVPGFPGKRGYRGDKGEPSAAGTGIKGEPGTPGLPGLSGS
KGDKGDQGLKGEAGSDGPAGPRGPPGAAGEPGKSEIINNENDIRNVPLMGPPGPPGVPGT
PGTKGEVGLPGPSGLDGEKGPRGKPGEPGPVGPAGPEGPRGERGLMGFSGPKGDKGDMGP
FGSPGLDGPTGEKGVSGPPGPIGLPGTMGQKGESGDKGGRSDMVFGPPGPPGPQGPVGPA
GPEGLGGPKGEQGIGIRGEKGASGSKGDKGDRGHLGLPGAHGLDGRPGRVGLIGPVGVAG
PAGPKGERGFVGDSGVPGPIGPQGIPGFVGPQGFKGNRGERGKKGNRGTKGDKGDQGAPG
LDAPCPLGDDGLPVSGCWNKGQNPFQLAK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatcaaaagtggggacttgttgataaaagtgtgcggatgacttgcagtgac
caccgttgcaaaaagcgcttttggacgaattggaaagatttgtccggtataactgtctgc
atcgcattatctttattgtcccttggattttgcgttctcgtttacctgagtacatcggag
ctgaagtccaggatactaaacctggaaaaacagagagatacgcagctctcctcgtggatc
acactcgagcaggtggaacccgttgtctttggacgaatagatcagattctggaagagaaa
ttggcggctcgacttcccaaaacacgagagaccagagaagcgccccatagctgtgtctgt
ccaccagggcctcctgggtcgaggggaaagagaggtcacaatggggatccaggacctcct
ggtccgcccggacgatcaggctttccgggtgacaaaggaacaatgggaattcctggaaga
atggggataaaaggatacgcaggggagaagggagcgccaggggagccaggcctgtctatc
attgggccacgaggacctcctggacagccaggaacaagaggcttcccaggctttccgggt
ccgattgggttggacggaaagcccggacagaacggcttgaaaggagacttgggtcaacgt
ggtcttaaaggagtcgcaggtgaacctgggctgaaaggggaaaagggcatatgtggagac
tacactcacaggcagatcttgcccatccccatgcgaaacatgcccccaataaaccctgta
atcctaaggcgcctcaagcagggcgagcctggagctcagggcccaccaggacctcctggc
cccccagggccctcagggacctctggactgaatggtgctagtggaccgccgggtaaacct
ggtgaaccaggaaaacctgggaaagatctacggctcctaccagggatgaagggtgagcca
ggcatggcaggaataaagggcgatgttggccccgctggtcctgaaggccccaagggactg
aagggagagcttggactgaagggggactttggtatgccaggaatgccagggaaacaagga
ttgaagggagagccaggttttccaggcagtcctggaagaaagggtcaagctggtatccct
ggtgtacctggttttcctggaaagaggggctacaggggtgacaagggtgaacccagcgca
gcaggaactggcatcaaaggagaaccagggacaccaggactcccaggcctatcaggatcc
aagggtgacaaaggcgaccaaggtctcaagggggaagcaggatctgatggtccagctgga
ccaagaggtcctccgggtgcggcaggagagccagggaaatcagaaatcatcaacaacgaa
aatgatattcggaatgtacctttgatgggcccacctggccctccaggggtccccggaaca
ccaggaacaaagggtgaagttggccttccaggcccatcaggtcttgacggagagaagggt
cctcgggggaagcctggagagccaggtcctgttggcccagcgggccctgaaggtcccaga
ggggagaggggcctgatgggtttctcaggacccaaaggagacaagggggacatgggtccc
tttggatcacctggtttagacggcccaactggtgaaaagggggtttctggaccccctggc
cccattggattaccaggcacaatgggtcagaagggcgagtccggagataagggaggaagg
tcagacatggtctttggacccccagggcctccaggtccccaaggaccagttggccccgcg
ggacctgaaggactgggaggaccaaagggggagcaaggcataggcatacggggagagaag
ggagcatctggttcgaagggcgataaaggggacaggggccatcttggacttcctggagct
catggtttagacggcaggcctggtcgagtgggtttaataggaccagttggtgtggcaggg
cctgctggaccaaagggggagagaggtttcgtgggagattcaggagtcccaggaccaatt
ggtcctcaaggcatccctggttttgtaggaccacaaggattcaaagggaaccggggagag
aggggcaagaaaggcaacaggggaactaaaggggataagggagaccaaggagcacccgga
ttagatgccccctgtccgttgggggatgacggcctaccagtatcagggtgttggaataaa
ggtcaaaatcctttccaactggccaagtag
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