Oncorhynchus keta (chum salmon): 118384198
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Entry
118384198 CDS
T09424
Symbol
tsen54
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen54 isoform X1
KO
K15326
tRNA-splicing endonuclease subunit Sen54
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oke03016
]
118384198 (tsen54)
Transfer RNA biogenesis [BR:
oke03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
118384198 (tsen54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_end_N2
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
118384198
NCBI-ProteinID:
XP_052375025
EnsemblRapid:
ENSOKEG00005007865
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All DBs
Position
5:21196131..21201182
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AA seq
527 aa
AA seq
DB search
MADQNKTSAKVEFGNELLNPSELFEARTRSHKIPVRGQKDFIPTGSDQQKDRLQQSLDEH
WNLVSEERVERLGNLVKAVWIPSAMIVELQSPAGKFWQTMGFSAHGKQCLHPEEALYLME
CGNLQVFYQDLPLSIQEGYERFLYSKTMSVQHYQVFGHLKRLGYVVNRFDPSVVPCSSVP
SQYERQLNLPQSQDRSGRLPKRKRSHSPTSRHTGTQEGPTSKRMEEEKDCNREEEDKNPD
SLPDLSAPDIDEIQTASHVDPTTSTEGGQGRSWWSKEGSPDPDSELPGQPQSSPRWDFSS
IPFPDLGSRSWLPSSLTSPDPCLLPGAVGSVGACDVAPWLQRLNLREVRMSRRECERERD
RDRYRRDINQDREVRRCRNWAEYQELQGRRIQRSRRDRPTHLWEGPVTPLHDPAQVTSTG
ELLDKISVIKSTRLLEGASSLKGSEEWRICFNIYQPDTVAEFKKSAPGKPYSRMCVCSFD
GPVPDLWTLKLLVFQSGAVPVTYAVVDHGDISFYSFKDFQIPTDTSF
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccaaaacaaaacatcagctaaagtagaattcggcaatgaattattaaaccca
tctgagctgttcgaagcccgcacgcgcagccacaagatcccggtgcgcgggcagaaggat
ttcattcccactgggtcggatcagcaaaaggataggcttcagcagagtttggacgagcac
tggaatctagtatctgaggagcgagtggagaggttggggaacctggtgaaggcagtgtgg
attcccagtgccatgatagtggagctgcagtcaccagcagggaagttttggcagactatg
gggttttctgcccatggtaagcaatgtctacatccagaagaggctctctatctaatggag
tgtggaaacctgcaagtgttctaccaagacctgccactgtccatccaagagggctatgag
agatttctatactcgaagacaatgagtgtacagcattaccaggtttttggccatttgaag
cgacttggttatgtggtgaacagatttgatcccagtgttgttccctgtagttctgtgcca
tcgcagtatgagaggcagttgaacctgccccagtcccaagacagatcaggaagacttccg
aagaggaaacgcagccacagccccacctccaggcacacaggaacacaggagggccccact
tctaagagaatggaggaggagaaagactgcaacagagaggaagaggacaagaatcctgac
tctcttccagatctttcagccccagacattgacgaaatccagacagcatcacacgttgac
cccaccacttcaaccgagggtggccagggcaggagctggtggtcaaaggaaggctcccca
gaccctgactctgagctgccaggtcagccccagagctcccctcgctgggactttagctcc
atccccttcccagacctgggctccagaagctggctccccagcagcctgacctccccagac
ccctgcctgctgcccggcgctgtggggtcagtgggggcctgcgatgtggccccctggctg
cagaggctcaacctgcgggaggtgaggatgtcccggcgtgagtgtgagagggagcgggac
agggaccggtaccggagggacatcaaccaggacagagaggtacgacgttgcaggaactgg
gcggagtaccaggagctacaggggagaaggattcaacggagccgcagagataggccaaca
cacctgtgggaggggccggtcacacccctacatgaccctgcacaggtcacttcaactggt
gagctgctggacaaaatcagtgtgatcaaatccacacggctgctggagggagcatccagt
ttgaaaggttcagaggagtggagaatctgtttcaacatttaccaacccgacacggtcgct
gaattcaaaaagagcgctcctggaaaaccctattctcgcatgtgtgtgtgcagtttcgat
ggtccagtgcctgacttgtggacactgaaattgctggttttccagagtggggctgtcccg
gtcacctatgcagtggtggaccacggggacatctccttctactccttcaaggacttccag
atacccacagacacgtccttctga
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