Oncorhynchus keta (chum salmon): 118400652
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Entry
118400652 CDS
T09424
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118400652
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118400652
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118400652
NCBI-ProteinID:
XP_052333076
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All DBs
Position
2:43231651..43289621
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AA seq
658 aa
AA seq
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MRQFNNDIILLITLQKPFYSGLAPCDVNSLCNNVTFTFYVVPISLTPFQGPPGRSGFPGD
KGTMGIPGRMGIKGYAGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQN
GLKGDLGQRGLKGVAGEPGLKGEKGICGDYTHRQILPIPMRNMPPINPVILKRLKQGEPG
AQGPPGPPGPPGPSGTSGLNGASGPPGKPGEPGKPGKDLRLLPGMKGEPGMAGIKGDVGP
AGPEGPKGLKGELGLKGDFGMPGMPGKQGLKGEPGFPGSPGRKGQAGIPGTPGFPGKRGY
RGDKGEPSAAGTGIKGEPGTPGLPGLSGSKGDKGDQGLKGEAGSDGPAGPRGPPGAAGEP
GKSEIINNENDIRNVPLMGPPGPPGVPGTPGTKGEVGLPGPSGLDGEKGPRGKPGEPGPV
GPAGPEGPRGERGLMGFSGPKGDKGDMGHFGSPGLDGPTGEKGVSGPPGPIGLPGTMGQK
GESGDKGGRSDMVYGPPGPPGPQGPVGPAGPEGLRGPKGEQGIGIRGEKGASGSKGDKGD
RGHLGLPGAHGLDGRPGRVGLIGPVGVAGPAGPKGERGFVGDSGVPGPIGPQGIPGVVGP
QGFKGNRGERGKKGNRGTKGDKGDQGAPGLDAPCPLGDDGLPVSGCWNKGQNPFQLAK
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgagacagttcaataatgacataatactgttgataacgctccaaaaaccattttattct
ggcctggctccgtgtgatgtgaactctctttgtaataatgtcacgttcactttttatgtt
gtacccatttctctcaccccttttcagggtccgcccggacgatcaggctttccgggtgac
aaaggaacaatgggaattcctggaagaatggggataaaaggatacgcaggggagaaggga
gcgccaggggagccaggcctgtctatcattgggccacgaggacctcctggacagccagga
acaagaggcttcccaggctttccgggtccgattgggttggacggaaagcccggacagaac
ggcttgaaaggagacttgggtcaacgtggtcttaaaggagtcgcaggtgaacctgggctg
aaaggggaaaagggcatatgtggagactacactcacaggcagatcttgcccatccccatg
cgaaacatgcccccaataaaccctgtaatcctaaagcgcctcaagcagggcgagcctgga
gctcagggcccaccaggacctcctggccccccagggccctcagggacctctggactgaat
ggtgctagtggaccgccgggtaaacctggtgaaccaggaaaacctgggaaagatctacgg
ctcctaccagggatgaagggtgagccaggcatggcaggaataaagggcgatgttggcccc
gctggtcctgaaggccccaagggactgaagggagagcttggactgaagggggactttggt
atgccaggaatgccagggaaacaaggattgaagggagagccaggttttccaggcagtcct
ggaagaaagggtcaagctggtatccctggtacacctggttttcctggaaagaggggctac
aggggtgacaagggcgaacccagcgcagcaggaactggcatcaaaggagaaccagggaca
ccaggactcccaggcctatcaggatccaagggtgacaaaggcgaccaaggtctcaagggg
gaagcaggatctgatggtccagctggaccaagaggtcctccgggtgcggcaggagagcca
gggaaatcagaaatcatcaacaatgaaaatgatattcggaatgtacctttgatgggccca
cctggccctccaggggtccccggaacaccaggaacaaagggtgaagttggccttccaggc
ccatcaggtcttgacggagagaagggtcctcgggggaagcctggagagccaggtcctgtt
ggcccagcgggccctgaaggtcccagaggggagaggggcctgatgggtttctcaggaccc
aaaggagacaagggggacatgggtcactttggatcacctggtttagacggccctactggt
gaaaagggggtttctggaccccctggccccattggattaccaggcacaatgggtcagaag
ggcgagtccggagataagggaggaaggtcagacatggtctatggacccccagggcctcca
ggtccccaaggaccagttggccccgcgggacctgaaggactgagaggaccaaagggggag
caaggcataggcatacggggagagaagggagcatctggttcaaagggcgataaaggggac
aggggccatcttggacttcctggagctcatggtttagacggcaggcctggtcgagtgggt
ttaataggaccagttggtgtggcagggcctgcaggaccaaagggggagagaggtttcgtg
ggagattcaggagtcccaggaccaattggtcctcaaggcatccctggtgttgtaggacca
caaggattcaaagggaaccggggagagaggggcaagaaaggcaacaggggaactaaaggg
gataagggagaccaaggagcacccggattagatgccccctgtccgttgggggatgacggc
ctaccagtatcagggtgttggaataaaggtcaaaatcctttccaactggccaagtag
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