Oncorhynchus kisutch (coho salmon): 109893560
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Entry
109893560 CDS
T09179
Symbol
tsen54
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen54
KO
K15326
tRNA-splicing endonuclease subunit Sen54
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oki03016
]
109893560 (tsen54)
Transfer RNA biogenesis [BR:
oki03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
109893560 (tsen54)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_end_N2
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
109893560
NCBI-ProteinID:
XP_020342408
Ensembl:
ENSOKIG00005002885
LinkDB
All DBs
Position
LG6:79338532..79343855
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AA seq
522 aa
AA seq
DB search
MADQNKTSAKVEFGNELLNPSELFEARTRSHKIPVRGQKDFIPTGSDQQKDRLQQSLDEH
WNLVSEERVERLGNLVKAVWIPSDMIVELQSPAGKFWQTMGFSAHGKQCLHPEEALYLME
CGNLQLFYQDLPLSIQEGYERFLYSKTMSVQHYQVFGHLKRLGYVVNRFDPSSVPSQYER
QLNLPQSQDRSGRLPKRKRSHSPTSRHTGTQEGPTSKRMEEEKDCNREEEDKNPDSLPDL
SAPDIDEIQTASHVDPTTSTKGGQGRSWWSKEGSPGPDSELPGHPQSSPRWDFSSIPFPD
LGSRSWLPSSLTSPDPCLLPGAVGSVGACDVAPWLQRLNLREVRMSRRECERERDRDRYR
RDINQDREVRRCRNWAEYQELQGRRIQRSRRDRPTHLWERPVTPLHDPAQVTSTGELLDK
ISVIKSTRLLEGASSLKGSEEWRICFNIYQPDTVAEFKKSAPGKPYSRMCVCSFDGPVPD
LWTLKLLAFQSGDVPVTYAVVDHGDISFYSFKDFQIPTDTSF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccaaaacaaaacatcagctaaagtagaattcggcaatgaattactaaaccca
tctgagctgttcgaagcccgcacgcgcagccacaagatcccggtgcgcgggcagaaggat
ttcattcccactgggtcggatcagcaaaaggataggcttcagcagagtttggacgagcac
tggaatctagtatctgaggagcgagtggagaggttggggaacctggtgaaggcagtatgg
attcccagtgacatgatagtggagctgcagtcaccagcaggaaagttttggcagactatg
ggtttttctgcccatggtaagcaatgtctacatccagaagaggctctctatctaatggag
tgtggaaacctgcaactgttctaccaagacctgccactgtccatccaagagggctatgag
agatttctatactcgaagacaatgagtgtacagcattaccaggtttttggccatttgaag
cgacttggttatgtggtgaacagatttgatcccagttctgtaccatcgcagtatgagagg
cagttgaacctgccccagtcccaagacagatcaggaagacttccgaagaggaaacgcagc
cacagccccacctccaggcacacaggaacacaggagggccccacttctaagagaatggag
gaggagaaagactgcaacagagaggaagaggacaagaatcctgactctcttccagatctt
tcagccccagacattgacgaaatccaaacagcatcacacgttgaccccaccacttcaacc
aagggtggccagggcaggagctggtggtcaaaggaaggctccccaggccctgactctgag
ctgccaggtcacccccagagctcccctcgctgggacttcagctccatccccttcccagac
ctgggctccagaagctggctccccagcagcctgacctccccagacccctgcctgctgccc
ggcgctgtggggtcagtgggggcctgcgatgtggccccctggctgcagaggctcaacctg
cgggaggtgaggatgtcccggcgtgagtgtgagagggagcgggacagggaccggtaccgg
agggacatcaaccaggacagagaggtacgacgttgcaggaactgggcggagtaccaggag
ctacaggggagaaggattcaacggagccgcagagataggccaacacacctgtgggagagg
ccggtcacacccctacatgaccctgcacaggtcacttcaactggtgagctgctggataaa
atcagtgtgatcaaatccacacggctgctggagggagcatccagtttgaaaggttcagag
gagtggagaatctgtttcaacatttaccaacccgacacggtcgctgaattcaaaaagagc
gctcctggaaaaccctattcccgcatgtgtgtgtgcagtttcgatggtccagtgcctgac
ttgtggacactgaaattgctggctttccagagtggggacgtcccagtcacctatgcagtg
gtggaccacggggacatctccttctactccttcaaggacttccagatacccacagacacg
tccttctga
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