Oncorhynchus kisutch (coho salmon): 109899683
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Entry
109899683 CDS
T09179
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109899683
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109899683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109899683
NCBI-ProteinID:
XP_031691647
LinkDB
All DBs
Position
LG11:40862504..40971695
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AA seq
727 aa
AA seq
DB search
MEEDQKWGVVDKSVRMTCSDHRCKKRFWTNWKDLSGITVCIALSLLSLGFCVLVYLSTSE
LKSRILNLEKQRDTQLSSWITLEQVEPVVFGRIDQILEEKLAARLPKTRETREAPHSCVC
PPGPPGPPGRSGFPGDKGTMGIPGRMGIKGYAGEKGAPGEPGLSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGQNGLKGDLGQRGLKGVAGEPGLKGEKGICGDYTHRQILPIPMRNMP
PINPVILKRLKQGEPGAQGPPGPPGPPGPSGTSGLNGASGPPGKPGEPGKPGKDLRLLPG
MKGEPGMAGIKGDVGPAGPEGPKGLKGELGLKGDFGMPGMPGKQGLKGEPGFPGTPGRKG
QAGIPGTPGFPGKRGYRGDKGEPSAAGTGIKGEPGTPGLPGLSGSKGDKGDQGLKGEAGS
DGPAGPRGPPGAAGEPGKSEIINNENDIRNVPLMGPPGPPGVPGTPGTKGEVGLPGPSGL
DGEKGPRGKPGEPGPVGPAGPEGPRGERGLMGFSGPKGDKGDMGPFGSPGLDGPTGEKGV
SGPPGPIGLPGTMGQKGESGDKGGRSDMVYGPPGPPGPQGPVGPAGPEGLGGPKGEQGIG
IRGEKGASGSKGDKGDRGHLGLPGAHGLDGRPGRVGLIGPVGVAGPAGPKGERGFMGDSG
VPGPIGPQGIPGFVGPQGFKGNRGFRGFKGEKGEPGLPGLDGLDAPCPVVCFLSSFPIHH
FGFPNHP
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatcaaaagtggggagttgttgataaaagtgtgcggatgacttgcagtgac
caccgttgcaaaaagcgcttttggacgaattggaaagatttgtccggtataactgtctgc
atcgcattatctttattgtctcttggattttgcgttctcgtttacctgagtacatcggag
ctgaagtccaggatactaaacctggaaaaacagagagatacgcagctctcctcgtggatc
acactcgagcaggtggaacccgttgtctttggacgaatagatcagattctggaagagaaa
ttggcggctcgacttcccaaaacacgagagaccagagaagcgccccatagctgtgtctgt
ccaccaggacctcctggtccgcccggacgatcaggctttccgggtgacaaaggaacaatg
ggaattcctggaagaatggggataaaaggatacgcaggggagaagggagcgccaggggag
ccaggcctgtctatcattgggccacgaggacctcctggacagccaggaacaagaggcttc
ccaggctttccgggtccgattgggttggacggaaagcccggacagaacggcttgaaagga
gacttgggtcaacgtggtcttaaaggagtcgcaggtgaacctggtctgaaaggggaaaag
ggcatatgtggagactacactcacaggcagatcttgcccatccccatgcgaaacatgccc
ccaataaaccctgtaatcctaaagcgcctcaagcagggcgagcctggagctcagggccca
ccaggacctcccggccccccagggccctcagggacctctggactgaatggtgctagtgga
ccgccgggtaaacctggtgaaccaggaaaacctgggaaagatctacggctcctaccaggg
atgaagggtgagccaggcatggcaggaataaagggtgatgttggccccgctggtcctgaa
ggccccaagggactgaagggagagcttggactgaagggggattttggtatgccgggaatg
ccagggaaacaaggattgaagggagagccaggttttccaggcactcctggaagaaagggt
caagctggtatccctggtacacctggttttcctggaaagaggggctacaggggtgacaag
ggcgaacccagcgcagcaggaactggcatcaaaggagaaccagggacaccaggactccca
ggcctatcaggatccaagggtgacaaaggcgaccaaggtctcaagggggaagcaggatct
gatggcccagctggaccaagaggtcctccgggtgcggcaggagagccagggaaatcagaa
atcatcaacaatgaaaatgatattcggaatgtacctttgatgggcccacctggccctcca
ggggtccccggaacaccaggaacaaagggtgaagttggccttccaggcccatcaggtctt
gacggagagaagggtcctcgggggaagcctggagagccaggtcctgttggcccagcgggc
cctgaaggtcccagaggggagaggggcctgatgggtttctcaggacccaaaggagacaag
ggggacatgggtccctttggatcacctggtttagacggccctactggtgaaaagggggtt
tctggaccccctggccccattggattaccaggcacaatgggtcagaagggcgagtccgga
gataagggaggaaggtcagacatggtctatggacccccagggcctccaggtccccaagga
ccagttggccccgcgggacctgaaggactgggaggaccaaagggggagcaaggcataggc
atacggggagagaagggagcatctggttcgaagggcgataaaggggacaggggccatctt
ggacttcctggagctcatggtttagacggcaggcctggtcgagtgggtttaataggacca
gttggtgtggcagggcctgcaggaccaaagggggagagaggtttcatgggagattcagga
gtcccaggaccaattggtcctcaaggcatccctggttttgtaggaccacaaggattcaaa
gggaaccggggtttccgaggctttaaaggagaaaagggtgaaccgggcctacctggcctg
gatgggctggatgccccttgtcctgtggtatgcttcctctcttcctttcctatccatcac
tttggcttccctaaccacccataa
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