Oryzias latipes (Japanese medaka): 101172903
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Entry
101172903 CDS
T02443
Symbol
tsen54
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen54
KO
K15326
tRNA-splicing endonuclease subunit Sen54
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ola03016
]
101172903 (tsen54)
Transfer RNA biogenesis [BR:
ola03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
101172903 (tsen54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_end_N2
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
101172903
NCBI-ProteinID:
XP_004071153
UniProt:
A0A3B3H9E4
LinkDB
All DBs
Position
8:1090832..1097405
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AA seq
493 aa
AA seq
DB search
MADRKMAAREDFYNEVLSPSELFAARSRSRKIPVRGQKDFFPDESEEQRQRLQQSLDEHW
SLVSEERVERLGNLVKGVWLPCRRLVELQSPAGKFWQTAGFSADGKQYLLPEEALYLMEC
GSVQIFHEDLPISIQDGYEAFLSADTVTLQQFQVFGHLKRLGYVVHRFDPGSEPTPYARQ
LNLPLSRARAGRAPKRRRSSSPPQTCSGALAQQEKMEAGQCSSGRQPTPAEEKDPRSPAG
GGEDGGQAWWLSEERTGQRRTHSSAPSRWDFSGLAFPDLGSGEGLVAPPDPALLPGGLSV
GVCDVASWRQKVNLRRVKVSEKEQRREEVQGRRMQQWSREVQRCRNWAEYQELLERRGAG
HPGQPAHLWSGEVTPLHDPTHPITTAELLEKLRVLQPSHLLEGASRLNGSDQWRISFNVY
QPDSAADFKKSNPGRPYARMCVCSFQGPVPDLRTIKQLAFQSGDVPVVFAVVDYGDISFY
TFKDFQLPQDVHP
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaagatggccgcgcgcgaggatttctacaacgaagttctcagtccctcg
gagctgtttgcggcccgatcccgcagtcggaagatcccggtccgaggacagaaggacttc
ttcccggacgagtctgaggagcagaggcagcggctgcagcagagtctggacgaacactgg
agcctggtctcagaggagagggtggagcgcctaggaaacctggtgaaaggcgtgtggttg
ccgtgccggcggctggtggagctgcagtctcctgccggaaagttctggcagacggcgggc
ttctccgcggacggaaagcagtacctcctcccagaagaggctctgtacctgatggagtgt
gggagcgtgcagatcttccacgaggacctgcccatctccatccaggacgggtacgaggcg
ttcctgtctgcagacacggtgaccctgcagcagtttcaggtctttggacacctgaagagg
ctcggctacgtggtgcacaggtttgatcccggctccgagccgacgccgtacgctcgacag
ctgaacctccccctgtcccgggccagagcaggacgggcgccgaagaggaggcggagctcc
agcccgccgcagacctgcagcggcgccctcgcacagcaggagaagatggaggcggggcag
tgcagctccgggcgccagcccacgcctgcggaggagaaagaccccaggagccctgcaggt
ggaggcgaagacgggggccaggcttggtggctgtctgaggagcgcacaggtcaaagacgg
actcacagctccgccccctcacgctgggacttcagcggcctcgctttcccggacctgggt
tctggggaggggctggtggcccctccagaccccgccctgctgcctgggggcctgagcgtg
ggcgtctgtgacgtagcctcctggaggcagaaggtcaacctgcggagggttaaggtgtcg
gagaaggagcagaggagggaggaggtccaaggcaggcggatgcagcagtggagcagagag
gttcagcggtgcagaaactgggcggagtatcaggagctcctggagaggcgaggggcgggg
catccgggccaaccagctcacctgtggagcggcgaggtcacgcccttacatgacccaacg
catcccatcaccacagcggagctgctggagaaactccgagtcctccaaccgtctcacctg
ctggagggcgcgtccaggttaaacggttctgaccagtggaggatcagcttcaacgtctac
cagccggactcggcggccgatttcaagaagagcaacccggggaggccgtatgcgcgcatg
tgcgtgtgcagcttccaggggccggtgccagacctgcggaccatcaagcagctggccttc
cagagcggagacgtccccgtcgtctttgccgtcgtggactatggggacatttccttttac
accttcaaggacttccagctgccccaggacgtccacccctga
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