Ostreococcus lucimarinus: OSTLU_37913
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Entry
OSTLU_37913 CDS
T01029
Name
(RefSeq) predicted protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03022
Basal transcription factors
olu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OSTLU_37913
09124 Replication and repair
03420 Nucleotide excision repair
OSTLU_37913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_37913
03400 DNA repair and recombination proteins [BR:
olu03400
]
OSTLU_37913
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OSTLU_37913
DNA repair and recombination proteins [BR:
olu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OSTLU_37913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
HemY_N
MetOD2
Motif
Other DBs
NCBI-GeneID:
5003934
NCBI-ProteinID:
XP_001420034
JGI:
37913
UniProt:
A4S452
LinkDB
All DBs
Position
10:551163..552650
Genome browser
AA seq
495 aa
AA seq
DB search
MAPARDAATASTSAADGAFVAFLCALAPRELDALYASSPWSALAVLRACDSIAKQIILRL
AYVDDGADARECAKWCGDGASDARALERAMARLARLRVTTALGEGEDARVVANEAFANNL
RRALERGFVNLDDGDGADAREDAGVAAKVPDRATLNAYAKAKWEDLLLTLTGASNAFSRP
GAKVKGRLDAQALFRAAGLTTATTAALKKGGQKRLKNAGVTAEGFAFLLQTAQEQIWVLL
TQYIRDSQKTSATSAISFLLRLTFQEPGRAYAMTGVLSDTEQDVVLDLTHLGLLYTFEVK
KKFYYVPTLLASGLSGGFTGDDGDTKAAAAAAEGHIIVETNYRVYAYTSSAVEMEILRLF
TRADYRLPNLYVGMLTRESVQNALRAGVDAEQIVGYIRAHAHKQVRRKKPSVPSTVCDQI
RLWARDMERMEAEECVLYCDFPQAGTFYGAVVSEAEKRGALLWRDDASRRLTVRASAHDE
MKAVVGALKQKLDAV
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgcgcgacgcggcgacggcgtcgacgagcgcggccgacggcgcgttcgtc
gcgtttctgtgcgcgctcgcgccgcgcgagctggacgcgctgtacgcgtcgtcgccgtgg
agcgcgctcgcggtgctgcgcgcgtgcgattcgatcgcgaaacaaatcatcctgcgcctg
gcgtacgtcgacgacggcgcggacgcgcgcgagtgcgcgaagtggtgcggcgacggcgcg
agcgatgcgcgcgcgctggagcgcgcgatggcgcggttggcgcggttgagggtgacgacg
gcgctgggcgagggcgaagacgcgcgcgtcgtcgcgaacgaggcgttcgcgaataatctg
cgacgcgcgctcgagcgaggattcgtgaatttggacgatggcgacggggcagacgcgcgg
gaggacgcgggcgtggcggccaaggtgccggatcgagcgacgctgaacgcgtacgcgaag
gcgaagtgggaagacttgctgctcacgctcacgggggcgtcgaacgcgttctcgaggccg
ggggccaaggtgaagggacgattggacgcgcaggcgctgtttcgagccgcggggctgacg
acggcgacgacggcggcgctgaagaagggcggacagaagcggttgaagaacgcgggcgtc
accgcggagggattcgcgtttttgttgcagacggcgcaagagcaaatatgggtgctgttg
acgcagtacatacgcgattcgcagaagacgtcggcgacgagcgcgatcagtttcttgctc
aggctgacgtttcaggaaccggggcgcgcgtacgcgatgacgggggtgctgagcgacacg
gagcaagacgtcgtgctcgatttgacgcatctcgggttgctgtacacgtttgaggtgaag
aaaaagttctactacgtccccacgctcctcgccagtggcttgtccggcggattcaccggg
gatgacggcgataccaaggcggcggcggcggcggcggaaggacacatcatagtcgagacg
aattatcgcgtgtacgcgtacacgtccagcgccgtggagatggagattttgcggctgttc
acgcgcgcggattatcgcttgcccaacttgtacgtcggtatgttgacgcgcgagagcgtg
caaaacgcacttcgcgcgggtgtggacgcagaacagatcgtggggtacattcgcgcgcac
gcgcacaagcaagttcgccgaaaaaagccgagtgtaccgagcacggtgtgcgaccaaatt
cgtctttgggcgcgcgacatggaacgcatggaagcagaggaatgcgtgctgtactgcgat
ttcccgcaggccggtactttttacggcgccgtcgtgagcgaggcggaaaaacgaggcgcg
ctgttgtggcgagacgacgcgtcgaggcggttgactgtccgcgcgtcggcgcacgacgag
atgaaagccgtcgtcggcgcgctgaagcaaaagttagacgcggtgtaa
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