KEGG   Ostreococcus lucimarinus: OSTLU_37913
Entry
OSTLU_37913       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03022  Basal transcription factors
olu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    OSTLU_37913
  09124 Replication and repair
   03420 Nucleotide excision repair
    OSTLU_37913
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:olu03021]
    OSTLU_37913
   03400 DNA repair and recombination proteins [BR:olu03400]
    OSTLU_37913
Transcription machinery [BR:olu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     OSTLU_37913
DNA repair and recombination proteins [BR:olu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     OSTLU_37913
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 HemY_N MetOD2
Other DBs
NCBI-GeneID: 5003934
NCBI-ProteinID: XP_001420034
JGI: 37913
UniProt: A4S452
LinkDB
Position
10:551163..552650
AA seq 495 aa
MAPARDAATASTSAADGAFVAFLCALAPRELDALYASSPWSALAVLRACDSIAKQIILRL
AYVDDGADARECAKWCGDGASDARALERAMARLARLRVTTALGEGEDARVVANEAFANNL
RRALERGFVNLDDGDGADAREDAGVAAKVPDRATLNAYAKAKWEDLLLTLTGASNAFSRP
GAKVKGRLDAQALFRAAGLTTATTAALKKGGQKRLKNAGVTAEGFAFLLQTAQEQIWVLL
TQYIRDSQKTSATSAISFLLRLTFQEPGRAYAMTGVLSDTEQDVVLDLTHLGLLYTFEVK
KKFYYVPTLLASGLSGGFTGDDGDTKAAAAAAEGHIIVETNYRVYAYTSSAVEMEILRLF
TRADYRLPNLYVGMLTRESVQNALRAGVDAEQIVGYIRAHAHKQVRRKKPSVPSTVCDQI
RLWARDMERMEAEECVLYCDFPQAGTFYGAVVSEAEKRGALLWRDDASRRLTVRASAHDE
MKAVVGALKQKLDAV
NT seq 1488 nt   +upstreamnt  +downstreamnt
atggcgccggcgcgcgacgcggcgacggcgtcgacgagcgcggccgacggcgcgttcgtc
gcgtttctgtgcgcgctcgcgccgcgcgagctggacgcgctgtacgcgtcgtcgccgtgg
agcgcgctcgcggtgctgcgcgcgtgcgattcgatcgcgaaacaaatcatcctgcgcctg
gcgtacgtcgacgacggcgcggacgcgcgcgagtgcgcgaagtggtgcggcgacggcgcg
agcgatgcgcgcgcgctggagcgcgcgatggcgcggttggcgcggttgagggtgacgacg
gcgctgggcgagggcgaagacgcgcgcgtcgtcgcgaacgaggcgttcgcgaataatctg
cgacgcgcgctcgagcgaggattcgtgaatttggacgatggcgacggggcagacgcgcgg
gaggacgcgggcgtggcggccaaggtgccggatcgagcgacgctgaacgcgtacgcgaag
gcgaagtgggaagacttgctgctcacgctcacgggggcgtcgaacgcgttctcgaggccg
ggggccaaggtgaagggacgattggacgcgcaggcgctgtttcgagccgcggggctgacg
acggcgacgacggcggcgctgaagaagggcggacagaagcggttgaagaacgcgggcgtc
accgcggagggattcgcgtttttgttgcagacggcgcaagagcaaatatgggtgctgttg
acgcagtacatacgcgattcgcagaagacgtcggcgacgagcgcgatcagtttcttgctc
aggctgacgtttcaggaaccggggcgcgcgtacgcgatgacgggggtgctgagcgacacg
gagcaagacgtcgtgctcgatttgacgcatctcgggttgctgtacacgtttgaggtgaag
aaaaagttctactacgtccccacgctcctcgccagtggcttgtccggcggattcaccggg
gatgacggcgataccaaggcggcggcggcggcggcggaaggacacatcatagtcgagacg
aattatcgcgtgtacgcgtacacgtccagcgccgtggagatggagattttgcggctgttc
acgcgcgcggattatcgcttgcccaacttgtacgtcggtatgttgacgcgcgagagcgtg
caaaacgcacttcgcgcgggtgtggacgcagaacagatcgtggggtacattcgcgcgcac
gcgcacaagcaagttcgccgaaaaaagccgagtgtaccgagcacggtgtgcgaccaaatt
cgtctttgggcgcgcgacatggaacgcatggaagcagaggaatgcgtgctgtactgcgat
ttcccgcaggccggtactttttacggcgccgtcgtgagcgaggcggaaaaacgaggcgcg
ctgttgtggcgagacgacgcgtcgaggcggttgactgtccgcgcgtcggcgcacgacgag
atgaaagccgtcgtcggcgcgctgaagcaaaagttagacgcggtgtaa

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