Oenanthe melanoleuca (Eastern black-eared wheatear): 130255000
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Entry
130255000 CDS
T09236
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oma00536
]
130255000 (COL13A1)
Glycosaminoglycan binding proteins [BR:
oma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130255000 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130255000
NCBI-ProteinID:
XP_056351180
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Position
6:complement(3931148..3978894)
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AA seq
649 aa
AA seq
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MGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQK
GEMGAAGPRGQPGPPGQKGEKGQCAEYPHREYLSTTLAALRSNQILTLKGEQGQAGIQGP
PGPPGPPGPAGPAGPEGIPGRPGPVGPPGRAGEPGKPGRDGKGLPGPPGPKGDTGIQGYP
GRKGEVGESGLPGARGLPGASGPKGEKGDAGIKGERGMPGLPGRHGSKGAPGVAAAGMKG
EPGTPGEKGDSGVPGRLGPPGLPGKRGQRGEKGRAGDPGLPGLPGPKGEKGIAENALVGA
RGEPGPPGLPGPPGPKGEAGEVGQPGAAGSQGEKGERGSPGDQGPMGPRGPKGEPGKDEM
MDYDGNISEALQEIRTLALMGPPGRPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPG
EMGPPGPHGLPGKDGPPGMKGEPGPAGVRGEKGDKGEPGQAGSPGLDGPSGEKGEQGDQG
IPGPSGLPGPIGLPGLTISGPPGPQGPPGPPGLQGVPGPKGEAGIDGVKGEKGAQGEKGD
RGPLGLPGASGLDGRPGPPGIPGPIGVSGPAGPKGERGSKGDPGVAGPMGPAGLPGLQGL
PGDKGVRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgggaatccctgggcggccgggactaaaagggcagtctggagagaagggtgctccagga
gaagctggcatgtctatcattgggccccgtggtccacccggccagcctggaacaagaggt
tttcctggattcccgggccctattggcttggatggcaaaccgggccatcctggacagaag
ggagagatgggtgctgcaggtcccaggggacaacctggacccccaggacaaaaaggagag
aagggtcagtgtgcagagtacccgcacagggagtacctaagcaccacactcgcagccctg
cgctctaaccagatccttaccctgaagggtgaacaaggacaagcagggatccaaggtccc
ccggggccccctggtcctccagggcccgctggaccagccggacccgaaggaatcccagga
cgtcctgggccggttggaccccctggcagagcgggagagcctggaaagcctggcagagat
ggaaagggcttacctgggcctcctggaccaaagggagacactgggattcaggggtaccct
ggcagaaagggtgaggtgggcgagtcaggcctgcccggtgcccgtggcctccctggagcc
tctggccccaagggtgaaaaaggggatgctggcataaagggggagagaggcatgccaggg
ctgccaggaagacatggctctaagggcgctcctggggtggccgccgcagggatgaagggt
gagcctgggactccaggagaaaagggagattctggagtgccagggaggctgggcccccca
ggtttgccagggaagagggggcagcggggtgagaagggacgagctggtgaccctgggctt
cctggactccctggcccaaagggagagaagggaattgctgagaatgccttggtgggagct
agaggagaacctggccctccaggtctgcctggaccccctggaccaaagggagaagctggt
gaggttggtcagcctggtgctgcaggatcacagggagagaagggggaacgtggttcacca
ggagaccagggacccatgggccccaggggccccaaaggagagcctgggaaggatgaaatg
atggactatgatgggaacatcagtgaagctctccaggaaataagaactttggccttgatg
ggacccccaggacgtccaggtgtggctggacctccagggccaccaggacagaagggtgaa
attggcttgccaggtcctccaggccacgatggagaaaagggaccacgtggcaaacctgga
gaaatgggcccccctggccctcatggactgccaggaaaggatggaccccctgggatgaag
ggagagccaggccctgctggggtcagaggagaaaagggggacaagggagagccaggacaa
gcaggctcaccgggtctagatggccccagtggagagaaaggtgaacaaggtgaccaaggg
ataccaggaccatcaggattgccagggcccattggacttccaggactgacaatatctggg
ccccctggaccccaaggccctccaggacctccaggtcttcagggtgttcctggacccaag
ggggaagcagggattgatggagtgaaaggagagaagggtgcccagggtgaaaaaggagac
agagggccactgggattacccggtgcttcaggtttagacggcaggcctggcccaccgggt
attccaggaccaattggggtttcgggaccagcaggaccaaaaggagaaaggggcagtaaa
ggagatcctggagttgcaggaccaatggggccagcagggcttcctggtttacaaggccta
cctggtgacaagggagtccggggggagaggggcaagaaaggctctagagggtctaaaggg
gataagggagaccaaggagcacctggattagatgcaccctgtccgttgggggaagatggc
cttccagttcaaggctgctggaataagtga
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