Onychostoma macrolepis: 131521230
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Entry
131521230 CDS
T09350
Symbol
col6a4a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
omc
Onychostoma macrolepis
Pathway
omc04510
Focal adhesion
omc04512
ECM-receptor interaction
omc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131521230 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131521230 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
131521230 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omc04147
]
131521230 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
omc00536
]
131521230 (col6a4a)
Exosome [BR:
omc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
131521230 (col6a4a)
Glycosaminoglycan binding proteins [BR:
omc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131521230 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
131521230 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
131521230
NCBI-ProteinID:
XP_058601742
LinkDB
All DBs
Position
16:complement(10753062..10786250)
Genome browser
AA seq
2549 aa
AA seq
DB search
MGKMWIFLSGLIIISCFLVSTAQQTGCLDENPQYDIVFLVDSSSSISTRDFQEVKTFMHT
FVDGLEIDTKKVQVGLARFSTDPQKEFLIGEYANKAELFKKIDNLPYRTGGTFIGKAMNF
LKDSYFTRAGGSRINIKVPQIVVVITDGDSADDIKRPAEDLRQKGIIIFAIAVDQKNMTN
LKAIANKPPERFVVNIENYQALQGLTTTMKEAVCILMRDQGKAIAPKFADVFVLVDSLAQ
KETQQIRELLNELATQLSVGDGSYKIALAQFGENVVKEFLFNDYKVTEKAKGYINRFKPR
PNGERKLGLAIDYVRTHFLNTASGSRIAKGYKQYLLVLRTGNSYDSTLRAIRTMRNEDVT
IFDIRLEANLRYLSPTLRTFQVDQNIIDVAADITKRIQQTEVFNVTGDCTSAQVADIVFI
VDESGSITSSNFQLVKRFIHRTISGLEVDSENVRVGLILYNDRPSAEFYLDSFVNKSDIL
NYIKIIPYRGGGTATGAALKFAKDNLFTRRRGSRKALGVKQIAVVITDGESQDDVTAPAA
ELRRSGVTLYALGVKDASVEELKKIGSYPDRQFVFNVDSFQMLTSLEKSLRKSICKDVIN
RDFDKDNRFILKQGCVNTEEADIYFLLDHSGSTRADFEDVKKFILGFLQLFNIGPNQVRV
GVVKVNRDPTLQFSLTEHKNRISLEAAVKNIIQPYGGIETGKALTYVADLFSQAKASRPA
KVQEILIVITDKKSQDEVSKPAAELRIQGVSVYAIGLRDANPAELLIMTDDATKQFYVRN
YDALNTLKNEIITDICSQEACKNKVADIMFLIDGSSSIYSLDFTSMKMFITKVVNGTVIG
EDNVHIGVVQFSDNPREQFPLNRFYNQDEVAKAINSIIQLTGNTYTGKALSFISKYFDKS
NGGRPDVPQFLVVITDGEAHDAVAAPAKAIRDKGVTIFSIGVGTVNTTQLWEISGTRDKV
YVEKDFDALKSIDKNLQFKLCSKTDCPSKQLADVIFLVQCTRRIRIQDFENIRNFLLSVV
NSTQIGDNLIRIGVIVYSGTPTQFSLNQYNNKRQVIEAIETLKSPTGNDNTAKALGYALN
YFKEENGGRQKRGIPQMLFVITDGDARDPDNLRARAAEFAKKHINVYGIGVARAKESELE
IITQNKNKVFHVDNYEGLKGLQKNVSSELCNATKPECQIEVADLVFLIDGSESIKEEPWR
TMIAFLLNVMNQLRISPELLRIGIAQFSSSYRKEFYLNEHEDVEGVKSAIQQIEQIKEGT
KIGNALLNVVEFFEQSKGSRRESGIPQNLVLITDGISSDSVDKAAEYLRRLQINIFVIGI
GDDVSMSQLSYIAGSPDRIFRVQNFNYLNLTTATFVDALCVPQNIESSCTIDIGIGFDNS
RTSSSSRSIFIDQKKLQSYLPEIIRYISVVHNLCCIRSPTLNTNVGFRLVDANGKRLDDF
SFEEYDEGVVKKVMALQSSQSLKFNTQLLRSFEEKFRASNSYVKVLIIFTDGLDEPVEDL
QLAVNSLRTSGVKALMTVALEGFKNSADLQSLEFGRGMHYNQLLSIGMQNVASVMQKQID
TVASRECCNVMCKCTGHEGARGNYGRPGVKGSPGLSGLSGFPGEEGLPGDRGLPGLNGTR
GHQGCIGRRGIKGGRGYRGDNGDDGEDGLDGVNGEQGVTGAAGSPGERGDPGSPGPRGIR
GDLGNPGQRGLRGDPGSPGLDNNSRGPKGDIGGPGIQGEPGQDGFPGLIGDNGRPGPDGR
RGSAGLLGPRGPPGAPGLQGLPGATGPLGARGPPGPVGQKGHIGLPGPQGSPGSPGRPGS
KGSSGSRGQKGQPGDPGEKGASGPPGPRGLPGKDGADGFGFPGPDGQKGDSGFPGYPGLQ
GDQGFKGRSGGVGPKGNRGRGGDAGRPGSRGNPGSEGMTGHRGPKGPRGSRQISDCQLIS
YVRDNCVCCRDNIKCPAYPTDLVIGLDMSEDVLPQGFERMRSVVLRLLDNINIAESSCPT
GARVAVVSYSSYTKYLIRFTDYHRKKQLIEAVKSIALERTSNRRNIGAAMRFVGRNVLKR
VRKGVLMRKIAIFLTAGVSQDSTSLTTAILEYKALNIKLGVISLRNVPNIRKAFEADETQ
SFILTVLGRLQDQNTTLTKIQSCVICFDPCRPARECDGTNLPSAPQELDMDLAVIVDGSR
SILSDEYEGVKEVLGGVLDQIVVSSQPNGADRQARVAVYQQSSTYSEGQSSVKVIFGFQQ
FQDRSLMKRSIYQDLQQTGGSSRLDLAMEYAIMQGILTAPKXRKNKMVLAIIGEETASQD
RVKLDFISRVAKCEGVVLFTLMVGDHISTAQVEGLASYPLEQHIIHLGHLKHGEHEYAQR
FMRTFFHILSKNVNTYPHPTLQQQCSNFQQRPGQRLEFEAAERPVYSVAVPSTAVEETED
QQNSGRGDSGVNFPIDRADNPCHLNSDRGTICGEYVQRWYYNEAVGTCLPFWYGGCDGNS
NRFNSEKECLQICEKQNPEVILHAKEETALVDDACFMKQDVGPCSDYVLSWHYDIQQNEC
IHFWFGGCGGNKNRFNTQEECEALCVRDI
NT seq
7650 nt
NT seq
+upstream
nt +downstream
nt
atggggaagatgtggatatttctttctggtttaatcattatatcatgtttccttgtaagc
actgcacagcaaacaggatgcctggatgaaaatccacaatatgacattgtattccttgtg
gatagttctagcagcatcagtactcgagacttccaggaggttaagacgttcatgcacact
ttcgtggatggtttggaaattgacactaaaaaggtacaagttggccttgctcggttcagc
accgatccccaaaaagagtttctgataggggaatatgcaaacaaagcggagctgtttaag
aaaatagataaccttccataccgaacaggaggcacgttcattggaaaagccatgaatttc
cttaaggacagctatttcacgagagcgggtggaagccgtatcaatataaaagtgcctcag
attgttgtggtgatcacagatggagactcagccgatgatataaaaagacctgctgaagat
ctgcgacagaagggtattatcatctttgccattgctgtcgatcaaaaaaatatgactaac
ttaaaggccatcgccaacaaaccacctgagcgttttgtggttaatattgagaattaccaa
gcactgcaaggactgacgaccaccatgaaggaggcagtgtgtatcttgatgagggatcag
gggaaagccattgctccaaagtttgctgatgtatttgtcctggtggatagtttggcccag
aaagaaacacagcagataagggaacttctcaacgaactggctacgcagctcagtgtgggc
gatggatcttataagatagcactggctcaatttggagagaatgtcgtcaaggagttcctg
tttaatgactacaaagtaactgaaaaagccaaaggatacataaatcggttcaagcccagg
cccaatggagagcgaaaattaggactggccatagattacgttcgtactcactttcttaac
acggcgtctggcagcagaattgctaaaggttacaaacagtatctgctggtgctgagaaca
gggaactcttacgactccactctgagggccatacgaacaatgaggaatgaggatgtgacc
atttttgatatcagattggaagcaaatttacgctacctttcacctacgctacgcactttc
caggttgaccagaatattattgatgttgcagcagatatcacaaaacgaattcagcaaaca
gaagttttcaatgttacaggagattgcacatcagcccaagtggcagatattgtgtttatt
gtggacgaatcgggtagtatcacaagtagcaactttcaactagtgaaacgtttcatccac
cgcacaattagtggccttgaggtggactctgaaaatgtgagggtgggactgattctttac
aatgacagacccagtgctgaattctacttggacagtttcgttaataaaagtgatattctg
aactatattaaaatcataccatacagaggcggaggaaccgcaactggtgcggccttgaag
tttgccaaggacaatctctttactaggaggaggggcagcaggaaagctctcggtgttaag
cagattgcagtcgtcatcactgatggcgagtcacaagatgatgtcaccgccccagctgct
gagttgaggcgctcaggagtcactttatatgccctcggggtgaaggatgctagtgtggag
gagctcaaaaaaataggatcttaccctgatcggcagtttgtgttcaatgtggatagtttc
cagatgcttacttcgctggagaaaagcctcagaaagagcatttgcaaggatgtgatcaat
agagattttgacaaggacaatagattcatcctaaaacaaggatgtgtaaacacagaggaa
gccgatatttatttcttgttggaccactctggcagcactcgtgccgactttgaagacgtg
aagaaatttatcctaggcttcctgcaactattcaacatcggacccaatcaagttcgtgtg
ggagttgtgaaagtcaaccgtgatccgactctacagttcagcctgacggagcacaaaaac
agaatctccttagaagcggctgtgaagaacatcattcagccctatggaggcatagagaca
ggcaaagcactaacttatgtggccgatctctttagtcaggctaaagcatcccgtccggct
aaggtgcaggagattctcattgtcattactgataagaaatcccaagatgaggtgagtaaa
ccagcggcagagctgaggattcaaggtgtttcagtctatgccattggattaagggatgcc
aaccctgctgagctcttgataatgacggatgatgcaactaagcagttctatgtgaggaac
tatgatgctctgaataccctcaagaacgaaattatcacagatatttgttcacaagaggcc
tgcaagaacaaagtggcagatatcatgtttttgattgacggctcttctagcatttatagc
cttgactttacatcaatgaagatgtttattaccaaagtcgtaaatggtaccgttattgga
gaagacaatgttcatattggggtggttcagttcagcgataatccacgggagcagtttcca
ctgaataggttctacaaccaagatgaagtagcgaaagctatcaacagcattatacagcta
acaggaaacacatacacaggaaaagcgctctcatttatttcaaagtattttgacaaatcc
aacggcggtcggcctgatgttccacagttccttgtagttatcacagatggggaagctcat
gatgctgtcgctgcacctgcaaaggccattagagacaagggtgtgaccatcttctcaata
ggtgtgggcactgtaaacaccacacagctctgggagatcagtggaactcgagataaagtg
tacgtggagaaggattttgatgcacttaagtccattgacaaaaacctccaattcaagctc
tgcagcaaaacagattgtccgagcaagcagttggctgatgtgatcttcctggtgcagtgc
accagacggattcgtattcaagactttgaaaacattagaaactttttactctccgtggtg
aacagcactcagattggggacaatctaattcgcattggcgttattgtttactcaggcact
ccaactcaattctctttaaaccagtacaacaataaacgtcaggtaattgaggccatagaa
accttgaagtccccaactggaaacgacaacacagctaaggctctcggatacgcgctcaat
tacttcaaagaagagaatggtggacgccagaaacggggcatccctcaaatgctgttcgta
attacggatggtgatgctagagatccagacaatttacgtgcacgggctgctgagtttgcg
aaaaaacatataaatgtgtatggaattggagtggctagagctaaagagagcgagctagaa
atcattacccagaacaaaaacaaagtcttccatgttgataattacgagggccttaaagga
ctgcagaagaacgtctccagtgagctttgcaatgcaaccaaaccagaatgccagatagag
gtagccgacctggtgtttctgattgatggatctgaaagcatcaaggaggagccatggaga
actatgattgctttcttgctaaatgttatgaaccagctgcgtatttctccagaactttta
agaattggtatagcccagttcagcagctcatatcggaaggagttctacttaaatgagcat
gaagatgtggagggggtgaaatcagcaattcaacaaatcgagcaaattaaagaagggaca
aaaattggaaacgctctgcttaacgttgtggaattcttcgagcagagcaaagggagtcgc
agagagagcggcataccgcaaaatcttgtacttattactgatggcatttcatcagacagt
gtggacaaagcagctgaatatctccgacgccttcaaattaacatctttgttattggaatt
ggggatgatgtctcaatgtcgcagctcagttatattgccgggtcacctgataggatattc
agagtgcagaacttcaactaccttaatctgacaacagcaacatttgttgatgccctctgt
gttcctcaaaacatagaatcaagttgtactatagacattggcatcggatttgataactcg
cgcaccagttcaagttctcggtcaatatttatagaccagaaaaagctgcagtcctacctg
cccgagatcatccggtacatttcagttgtgcacaacctgtgctgtatccgcagcccaacc
ctcaataccaatgtaggcttccgattggtcgatgctaatggcaagaggctggatgatttt
tccttcgaagagtacgatgaaggtgtggtaaaaaaagtgatggcacttcagtcttcacaa
tctctgaaattcaacacccagcttctacgctcgtttgaggagaagttcagagcttcaaat
tcttatgtaaaggtgctgatcatctttacagacgggttggatgagcctgttgaggacctt
cagcttgccgtcaacagcctcaggaccagtggtgtaaaagcattgatgactgtggcgcta
gaaggatttaaaaactctgctgacctgcagagtctggaattcggtcgagggatgcactac
aatcagcttctctctatcggcatgcagaatgtggccagtgtcatgcagaagcagattgat
acagttgcctcaagggaatgctgtaatgttatgtgtaaatgcactggtcatgagggagca
cgtggaaattatggtcgtccaggggtgaaggggtcacctggactgagcggactttctggt
ttccctggagaagaaggattacctggtgatagagggcttcccgggttgaatggaactcga
ggacatcagggatgcattggaagaagaggcataaagggtggcagaggctacagaggtgac
aatggagatgatggagaagatggtttagatggggtaaatggtgaacagggtgtaacagga
gcagcaggaagcccaggagagcgaggagatccaggcagcccaggtccaagaggtatcaga
ggagacctcggaaacccaggacagcgaggcctaagaggagatccgggaagtccaggatta
gacaacaactcccgcggtcctaaaggtgacatcggtggcccaggcattcagggtgaacca
ggacaagatggttttcctggcctaattggtgataatggcagaccaggtcctgatggcaga
agaggctcagcgggtctgctgggtcccagagggcctccaggagcaccaggactacaagga
ctccctggagccacaggtccactgggtgctcgtggtccacctggtccagttgggcagaaa
ggtcatattggtctacctggacctcagggatctcctggctctccaggaaggccaggatct
aaaggaagctctgggtccaggggacagaagggccagccaggtgatcctggagagaaggga
gcttccggacctccaggcccaagaggactgccgggaaaagatggtgcagatggctttgga
ttcccaggacccgatggacagaagggagattctggtttccctggttatcctggacttcag
ggtgatcagggttttaaaggaagaagtggaggtgttggtcctaaaggcaacagaggaaga
gggggcgatgctggaaggccaggatcacgtggaaatcctggcagcgagggcatgactgga
cacaggggcccaaaaggaccacgaggatccagacagatttctgactgtcagctgatctca
tatgtccgagacaactgtgtttgctgcagagataacataaaatgccctgcataccccact
gatcttgtgattggcttggacatgtctgaagatgtgcttcctcaaggctttgaacgcatg
cgttctgtagttcttagactgctggacaatatcaacattgcagagagcagctgcccaacg
ggggctcgggtggctgtggtctcctacagctcctacaccaaatacctgatccgcttcacc
gactatcaccgcaagaagcagcttattgaagcggtgaagagcatcgccctggaacgcact
tcaaatcgacgtaacataggcgctgccatgcggtttgtgggcaggaatgtcctgaagcgt
gtgcgaaagggcgtcctgatgaggaagatagcgatcttcctcaccgctggagtatctcag
gattccacgtccctcaccacagccattctagagtacaaagccctgaacattaagcttggg
gtcatctcactaaggaatgttcctaatatcagaaaagcttttgaggcagatgaaacccag
agttttatcttgactgtgctgggtagattgcaagaccagaatactactctcactaagatc
cagagttgtgttatttgctttgatccctgcagaccagctagagaatgtgatggcaccaac
ctgccatctgctcctcaggagttggacatggacttggcggtgattgtggacggctcccgt
agcatcctgtctgacgagtacgagggtgtgaaggaggtgctcggcggtgtgctcgatcag
atcgtcgtgagcagtcaacccaacggggccgacagacaagcgagagtggccgtctaccag
cagagctccacatacagtgaaggccagtccagtgtcaaagtgatattcggcttccagcag
ttccaagatcgcagtttaatgaagcggagcatctaccaggatctacagcaaaccggaggc
tcttcccggctggatcttgcgatggaatacgccataatgcagggcatcctcaccgctcct
aagngtcgcaagaacaagatggtgttggccatcattggagaggagacggcatctcaggac
agagtgaagctggactttatctccagggtggcgaagtgtgagggtgttgttctcttcacc
ctgatggtgggtgaccacatcagcaccgctcaggtggaggggcttgccagctacccctta
gaacagcacatcattcacctgggccacttgaaacatggagaacatgagtacgcgcagcgc
ttcatgaggacgttcttccacattctgagcaaaaatgtgaacacctaccctcatccaaca
ctccagcaacagtgtagtaattttcagcagcgtccaggtcagcgtttggaattcgaggct
gcagagagacctgtatatagtgttgctgtgccatccactgcagtggaggagactgaggac
cagcagaactcaggtcgtggagactcaggagtcaattttcctattgaccgcgctgataat
ccgtgtcacctgaacagtgaccgtggcaccatctgtggtgaatatgtgcagcgctggtac
tataatgaagcggtcggtacatgtttacccttctggtacgggggttgtgatggaaacagt
aaccgttttaattcagaaaaggaatgccttcagatctgtgaaaaacaaaatcctgaagta
attctgcacgcaaaagaggaaacggcattagtggatgatgcgtgcttcatgaaacaggat
gtggggccctgcagtgactatgttttaagctggcactatgacatccagcagaatgaatgc
attcacttctggtttggaggatgtggaggaaacaaaaacaggtttaacacgcaggaggaa
tgtgaagctctttgtgtaagagacatttaa
DBGET
integrated database retrieval system
