Oryzias melastigma (Indian medaka): 112146705
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Entry
112146705 CDS
T07439
Symbol
tsen54
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen54 isoform X1
KO
K15326
tRNA-splicing endonuclease subunit Sen54
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oml03016
]
112146705 (tsen54)
Transfer RNA biogenesis [BR:
oml03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
112146705 (tsen54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_end_N2
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
112146705
NCBI-ProteinID:
XP_024128441
Ensembl:
ENSOMEG00000014402
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Position
LG8:204538..216893
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AA seq
541 aa
AA seq
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MDSAFWVPCMPIKLFIYYLKCSNTSEHKELFIFHGCMGAMTRRRSAAAAGSNMADLNKAA
REDFYNEVLSPSELFAARSRSRKIPVRGQKDFFPDDSDEQRQRLQQSLDEHWSLISEERV
ERLGNLVKGVWMPRRRLVELQSPAGKFWQTMGFSADGRQYLLPEEALYLMECGSVQIFHE
DLPISIQDGYEMFLSADAVTLQQFQVFGHLKRLGYVVHRFDPSAEPSPYARQLNLPLSRG
RAGRALKRRRSSSPTQTCSSEHAQEEDMEEEQVSSERQPAPAEENDPGTSAGEGRSWWTS
EQHVDPKQTHSSAPSRWDFSGIAFPDLGSGEGLVAPPDPALLPGGLSVGVCDVASWRQKV
NLRRVRESAREQRREELQSRRMQEWSREVQRCRNWVEYQELLERRGAEHQGRPAHLWSGE
VTPLHDPAQPVTTAELLEKIRVIKPSHLLDGASRLSGSDPWRISFNVYQPDSAADFKKSK
PGRPYARMCVCSFHGPVPDLRVIKQLASQSGDVPVVFAVVDYGDISFYTFKDFQLPQDVH
P
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggattcagccttttgggtgccttgcatgccgataaaattattcatttattatctcaag
tgttcaaatacatcagaacataaagagttattcatatttcatggctgcatgggcgctatg
acccggcggaggagtgcagctgcagccggaagcaacatggcggacctaaacaaggcagcg
cgcgaggatttctacaacgaagttctcagtccctcggagctgtttgcagcccgatcccgc
agtcggaagatcccggtccgaggacagaaggacttcttcccggatgactccgacgagcag
aggcagcggctgcagcagagtctggatgaacactggagcctcatttctgaggagagggtg
gagcgtctaggaaacctggtgaaaggtgtgtggatgccccgccggcggctggtggagctg
cagtctcctgctgggaagttctggcagacgatgggcttctctgcagacggacggcagtac
ctgctccctgaagaggcgctgtacctgatggagtgtgggagcgtgcagatcttccacgag
gacctgcccatctccatccaggacgggtacgagatgttcctgtctgcggacgccgtgacg
ctgcagcagtttcaggtgtttgggcatctgaagaggctcggctacgtggtgcacaggttt
gatcccagcgccgagccgtcaccgtacgcccggcagctgaacctccctctgtcccggggc
agagcaggacgggcgctgaagaggaggcggagctccagccccacgcagacctgcagcagc
gagcacgctcaggaggaggacatggaggaggagcaggtcagctccgagcgccagccagcg
ccggcggaggagaacgaccccgggacctctgcaggcgagggcaggtcgtggtggacgtct
gagcagcacgtggatccaaaacagactcacagctccgccccctcgcgctgggacttcagc
gggatcgctttcccggacctgggctccggggagggcctcgtggcgccgccggaccccgcc
ctgctgcccggaggcctgagcgtgggcgtgtgtgacgtggcgtcctggaggcagaaggtc
aacctgcggagggtcagagagtctgcgcgggagcagaggagggaggagctccagtccagg
cgcatgcaggagtggagcagggaggttcagcggtgcagaaactgggtggagtatcaggag
ctcctggagaggcgaggggcggagcatcagggccgaccggctcacctgtggagcggcgag
gtcacgcccttacatgacccggcccagcccgtcaccacagcggagctgctggagaagatc
cgggtcatcaaaccgtctcacctgctggacggagcgtccaggttaagcggttctgaccca
tggaggatcagcttcaacgtttaccagccagactcggcggctgatttcaagaagagcaaa
ccgggcaggccgtacgcgcgcatgtgcgtgtgcagcttccacggcccggtgccggacctg
cgggtcatcaagcagctggcctcccagagcggagacgtccccgtcgtcttcgccgtggtg
gactacggagacatctccttttacaccttcaaggacttccagctgccccaggacgttcac
ccctga
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