Oryzias melastigma (Indian medaka): 112162622
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Entry
112162622 CDS
T07439
Symbol
rnf139
Name
(RefSeq) E3 ubiquitin-protein ligase RNF139
KO
K15703
E3 ubiquitin-protein ligase RNF139 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112162622 (rnf139)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112162622 (rnf139)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112162622 (rnf139)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRC8_N
zf-RING_2
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
112162622
NCBI-ProteinID:
XP_024154221
Ensembl:
ENSOMEG00000012924
LinkDB
All DBs
Position
LG11:21205152..21213251
Genome browser
AA seq
702 aa
AA seq
DB search
MASTQARLGQQALAVLDVALRVPCIFIIDSIFNSYSDPGLGWPGTMGKVFIRVMGVLIST
VVLLLSQKALFKFYTLFFAVVLGVAAVLINYHVTSHIDFYNTYYKTALGFRLLPKNGPTL
WMGMAAVQLLFSVGYVFLLNLQSVFAALVVLDIMIPLWAMMLELPTDVRQLVAVFSGLVL
ALNTAVCLAMRLKWFYYSCRYVYLLVRHMYRIYGLQLLLEDTWKRIRFPDVLRVFWLTRI
TTQALILVYVVRAVRKESGDATGGAADGSSDSQGYLLSWDVFWDLTSNLIISGCDSTLTV
LGMSAVISSVAHYLGLSILAFIGSTEEEDKRLGFVAPVLFFILALQTGLSSLDPEERLVR
LSRNMCLLLTAILHFIHGMTDPVLMSLSASHVSSFRRHFPVLLVSLALFVLPVALSYALW
HNYVLNTWLFAVTAFCVELCLKVVVSLTVYGLFMADGFSNVLWEKLDDYVYYVRSTGNII
EFLFGVIMFGNGAYTMMFESGSKIRACMMCLHAYFNIYLQAKNGWKTFINRRTAVKKINS
LPELRGDQLWDIEDVCAICYQEFVSSARITPCHHYFHALCLRKWLYIQDTCPMCHQRVYV
EDEGRDRAAFSNNNGGYAAPQDAAAAVPPAAGANQQEQPVAELLANGAAAGIHAARGAEQ
LDNELLEDNDSIEYDEEEWGTQNGRIPIEEDYINDDTDSTEE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccactcaagcccggctaggccagcaggccttagcggtgctagatgtggctcta
cgagttccctgtatttttattatcgactcgatttttaactcgtacagcgaccctggactg
ggatggcccggcacgatggggaaagtgttcatcagagttatgggtgtcctcatctccacc
gtggttctacttctttcccagaaagccctcttcaagttttataccctcttctttgccgtc
gtcctcggcgtggcggcggtcctcataaactaccacgtcacctcccacatagacttctac
aacacgtactacaaaacggccctggggttcagactgttgccaaagaacgggccgacgctc
tggatgggcatggcggcggtgcagcttttgttcagtgtcggctacgtgttcctgctcaac
ctgcagtccgtgtttgctgccttggtcgtgttggacatcatgattcccctgtgggccatg
atgctggagctgcccacagacgtcaggcagcttgtggccgtgttctccggcctggtgctg
gctctcaacacggctgtctgtctggccatgaggctcaagtggttctactactcgtgtcgg
tacgtctacctcctggtacgacacatgtacaggatttacggactccaactgctgctagag
gacacgtggaaaaggattcgcttccccgatgtgctccgggtgttctggctgacgcggatc
actactcaggcgctgattctggtttatgtggtgcgagcggtaaggaaagaaagtggagac
gccaccgggggagcagcagacggcagctctgattcacagggttacctgctgagttgggat
gttttctgggatctgaccagcaacctgatcatctctggttgtgattccactctcaccgtg
ttggggatgagcgccgtcatctcctctgtggcgcattacctcggcctcagcatcctggct
tttataggttcgactgaggaggaggataagcgtttaggctttgtggctcctgtgctgttc
ttcatcctggccctgcagacgggcctcagcagcctggatccagaggagcgtttggtgcgg
ctgagccggaacatgtgccttctgctgacggccattctgcactttatccacggcatgacc
gaccccgtcctgatgtcgctcagcgcctcccacgtctcctcctttcgccgccatttcccc
gtcctgctggtgtcgctggcgctcttcgtgctccccgtggcgctcagctacgccctctgg
cacaactacgtcctcaacacttggctcttcgctgtcactgccttctgtgtggagctctgc
ctcaaggtggtggtgtccctgacggtttatggcctcttcatggctgatgggttctccaac
gtcctgtgggaaaagctggacgactacgtctattatgtacgctccactggcaacatcatc
gagttcctgttcggcgtcatcatgttcgggaacggcgcctacaccatgatgttcgagtcg
ggcagcaagatccgcgcctgcatgatgtgcctgcacgcctacttcaacatctacctgcag
gccaagaacggctggaagaccttcatcaaccgccgcaccgccgtcaagaagatcaactcg
ctgccggagctgcgcggtgatcagctgtgggacatcgaggacgtgtgcgccatctgctac
caagagttcgtgagctcggctcgcatcacgccgtgccaccactacttccacgcactgtgc
ctgaggaagtggctctacatccaggacacgtgccccatgtgccaccagagggtttacgtc
gaggacgaggggcgggaccgagctgccttttccaacaacaacgggggctacgcagcgccg
caggacgccgccgccgcagtcccacccgcagctggagctaaccagcaagaacagcccgtg
gccgagctgctggccaacggggcggcagccgggatccacgccgccagaggagcagagcag
ctggacaacgagctgctggaggacaacgacagcatagagtacgacgaagaggagtggggg
actcagaacggacggatcccaatagaagaggactatatcaacgatgacacagactccacg
gaggagtga
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