Oncorhynchus nerka (sockeye salmon): 115110673
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Entry
115110673 CDS
T07952
Symbol
tsen54
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen54 isoform X1
KO
K15326
tRNA-splicing endonuclease subunit Sen54
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
one03016
]
115110673 (tsen54)
Transfer RNA biogenesis [BR:
one03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
115110673 (tsen54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_end_N2
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
115110673
NCBI-ProteinID:
XP_029492367
EnsemblRapid:
ENSONEG00000008283
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Position
LG26:22720959..22729022
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AA seq
522 aa
AA seq
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MADENKTSAKVEFGNELLNPSELFEARTRSHKIPVRGQKDFIPTGSDQQRDRLQQSLDEH
WNLVSEERVERLGNLVKAVWIPSDMIVELQSPAGKFWQTMGFSAHGKQCLHPEEALYLME
CGNLQVFYQDLPLSIQEGYERFLYSKTMSVQHYQVFGHLKRLGYVVNRFDPSSVPSHYER
QLNLPQSRDSSGRLRKRKRSHSPTSRHTGTQEGPTSKITEEEKDCNREEEDKNPDSLPDL
SAPDIDEIQTASHVDPTTSTVGGQGWSWWSKKGSPDPDSELPGQPQSSPRWDFSSIPFPD
LGSRCWLPSSLTSPDPCLLPGAVGSVGACDVAPWLQRLNLREVRMSRREWERERDRDRYR
RDINQDREVRRCRNWAEYQELQERRIQRSRRDRPSHLWEGPVTPLHDPAQVTSTGELLDK
ISVIKSTRLLEGASSLKGSEEWRICFNIYQPDTVAEFKKSAPGKPYSRMCVCSFDGPVPD
LWTLKLLAFQSGDVPVTYAVVDHGDISFYSFKDFQIPTDTSF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgaaaacaaaacatcagctaaagtagaattcggcaatgaattactaaaccca
tctgagctgttcgaagcccgcacgcgcagccacaagatcccggtgcgcgggcagaaggat
ttcattcccactgggtcggatcagcaaagggataggcttcagcagagtttggacgagcac
tggaatctagtatctgaggagcgagtggagaggttggggaacctggtgaaggcagtgtgg
attcccagtgacatgatagtggagctgcagtcaccagcagggaagttttggcagactatg
gggttttctgcccatggtaagcaatgtctacatccagaagaggctctctatctaatggag
tgtggaaacctgcaagtgttctaccaagacctgccactgtccatccaagagggctatgag
agatttctatactcgaagacaatgagtgtacagcattatcaggtttttggccatttgaag
cgacttggctatgtggtgaacagatttgatcccagttctgtaccatcacattatgagagg
cagttgaacttgccccagtcccgagacagctcaggaagacttcggaagaggaaacgcagc
cacagccccacctccaggcacacaggaacacaggagggccccacttctaagataacggag
gaggagaaagactgcaacagagaggaagaggacaagaatcctgactctcttccagatctt
tcagccccagacattgacgaaatccagacagcatcacacgttgaccccaccacttcaact
gtgggtggccagggctggagctggtggtcaaagaaaggctccccagaccctgactctgag
ctgccaggtcagccccagagctcccctcgctgggacttcagctccatccccttcccagac
ctgggctccagatgctggctccccagcagcctgacctccccagacccctgcctgctgccc
ggggctgtggggtcagtgggggcctgcgatgtggccccctggctgcagaggctcaacctg
cgggaggtgaggatgtcccggcgtgagtgggagagagagcgggatagggaccggtaccgg
agggacatcaaccaggacagagaggtacgacgttgcaggaactgggcggagtaccaggag
ctacaggagagaaggattcaacggagccgcagagataggccatcacacctgtgggagggg
ccggtcacacccctacatgaccctgcacaggtcacttcaactggtgagctgctggataaa
atcagtgtgatcaaatccacacggctgctggagggagcatccagtttgaaaggttcagag
gagtggagaatctgtttcaacatttaccaacccgacacggtcgctgaattcaagaagagc
gctcctggaaaaccatattctcgcatgtgtgtgtgcagtttcgatggtccagtgcctgac
ttgtggacactgaaattgctggctttccagagtggggacgtcccggtcacctatgcagtg
gtggaccacggggacatctccttctactccttcaaggacttccagatacccacagacacg
tccttctga
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