Oncorhynchus nerka (sockeye salmon): 115113266
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Entry
115113266 CDS
T07952
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115113266
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115113266
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115113266
NCBI-ProteinID:
XP_029496603
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All DBs
Position
LG28:32880842..32996623
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AA seq
734 aa
AA seq
DB search
MEEDQKWGVVDKSVRMTCSDHRCKKRFWTNWKDLSGITVCIALSLLSLGFCVLVYLSTSE
LKSRILNLEKQRDTQPSSWITLEQVEPVVFGRIDQILEEKLAARLPKTRETREAPHSCVC
PPGPPGPPGRSGFPGDKGTMGIPGRMGIKGYAGEKGAPGEPGLSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGQNGLKGDLGQRGLKGVAGEPGLKGEKGICGDYTHRQILPIPMRNMP
PINPVILKRLKQGEPGAQGPPGPPGPPGPSGTSGLNGASGPPGKPGEPGKPGKDLRLLPG
MKGEPGMAGIKGDVGPAGPEGPKGLKGELGLKGDFGMPGMPGKQGLKGEPGFPGTPGRKG
QAGIPGTPGFPGKRGYRGDKGEPSAAGTGIKGEPGTPGLPGLSGSKGDKGDQGLKGEAGS
DGPAGPRGPPGAAGEPGKSEIINNENDIRNVPLMGPPGPPGVPGTPGTKGEVGLPGPSGL
DGEKGPRGKPGEPGPVGPAGPEGPRGERGLMGFSGPKGDKGDMGPFGSPGLDGPTGEKGV
SGPPGPIGLPGTMGQKGESGDKGGRSDMVYGPPGPPGPQGPVGPAGPEGLGGPKGEQGIG
IRGEKGASGSKGDKGDRGHLGLPGAHGLDGRPGRVGLIGPVGVAGPAGPKGERGFVGDSG
VPGPIGPQGIPGFVGPQGFKGNRGERGKKGNRGTKGDKGDQGAPGLDAPCPLGDDGLPVS
GCWNKGQNPFQLAK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatcaaaagtggggagttgttgataaaagtgtgcggatgacttgcagtgac
caccgttgcaaaaagcgcttttggacgaattggaaagatttgtccggtataactgtctgc
atcgcattatctttattgtctcttggattttgcgttctcgtttacctgagtacgtcggag
ctgaagtccaggatactaaacctggaaaaacagagagatacgcagccctcctcgtggatc
acactcgagcaggtggaacccgttgtctttggacgaatagatcagattctggaagagaaa
ttggcggctcgacttcccaaaacacgagagaccagagaagcgccccatagctgtgtctgt
ccaccaggacctcctggtccgcccggacgatcaggctttccgggtgacaaaggaacaatg
ggaattcctggaagaatggggataaaaggatacgcaggggagaagggagcgccaggggag
ccaggcctgtctatcattgggccacgaggacctcctggacagccaggaacaagaggcttc
ccaggctttccgggtccgattgggttggacggaaagcccggacagaacggcttgaaagga
gacttgggtcaacgtggtcttaaaggagtggcaggtgaacctggtctgaaaggggaaaag
ggcatatgtggagactacactcacaggcagatcttgcccatccccatgcgaaacatgccc
ccaataaaccctgtaatcctaaagcgcctcaagcagggcgagcctggagctcagggccca
ccaggacctcctggccccccagggccctcagggacctctggactgaatggtgctagtgga
ccgccgggtaaacctggtgaaccaggaaaacctgggaaagatctacggctcctaccaggg
atgaagggtgagccaggcatggcaggaataaagggcgatgttggccccgctggtcctgaa
ggccccaagggactgaagggagagcttggactgaagggggactttggtatgccaggaatg
ccagggaaacaaggattgaagggagagccaggttttccaggcactcctggaagaaagggt
caagctggtatccctggtacacctggttttcctggaaagaggggctacaggggtgacaag
ggcgaacccagcgcagcaggaactggcatcaaaggagaaccagggacaccaggactccca
ggcctatcaggatccaagggtgacaaaggcgaccaaggtctcaagggggaagcaggatct
gatggtccagctggaccaagaggtcctccgggtgcggcaggagagccagggaaatcagaa
atcatcaacaatgaaaatgatattcggaatgtacctttgatgggcccacctggccctcca
ggggtccccggaacaccaggaacaaagggtgaagttggccttccaggcccatcaggtctt
gacggagagaagggtcctcgggggaagcctggagagccaggtcctgttggcccagcgggc
cctgaaggtcccagaggggagaggggcctgatgggtttctcaggacccaaaggagacaag
ggggacatgggtccctttggatcacctggtttagacggccctactggtgaaaagggggtt
tctggaccccctggccccattggattaccaggcacaatgggtcagaagggcgagtccgga
gataagggaggaaggtcagacatggtctatggacccccagggcctccaggtccccaagga
ccagttggccccgcgggacctgaaggactgggaggaccaaagggggagcaaggcataggc
atacggggagagaagggagcatctggttcgaagggcgataaaggggacaggggccatctt
ggacttcctggagctcatggtttagacggcaggcctggtcgagtgggtttaataggacca
gttggtgtggcagggcctgcaggaccaaagggggagagaggtttcgtgggagattcagga
gtcccaggaccaattggtcctcaaggcatccctggttttgtaggaccacaaggattcaaa
gggaaccggggagagaggggcaagaaaggcaacaggggaactaaaggggataagggagac
caaggagcacccggattagatgccccctgtccgttgggggatgacggcctaccagtatca
gggtgttggaataaaggtcaaaatcctttccaactggccaagtag
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