Oncorhynchus nerka (sockeye salmon): 115113392
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Entry
115113392 CDS
T07952
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115113392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115113392
03041 Spliceosome [BR:
one03041
]
115113392
03036 Chromosome and associated proteins [BR:
one03036
]
115113392
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115113392
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115113392
mRNA cycle factors
Common to processing body (P body) and stress granule
115113392
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115113392
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
115113392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
APC_u13
Motif
Other DBs
NCBI-GeneID:
115113392
NCBI-ProteinID:
XP_029496828
EnsemblRapid:
ENSONEG00000006172
LinkDB
All DBs
Position
LG3:56000929..56030784
Genome browser
AA seq
700 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAGLDLNSDGQGGGTGRRYIPPHLRNKEVSKNDSPGGWDGGRSNG
FTNGYHDNRNGGRGGPPRNDRGFGGGQDGGGWGSAPRQDAAYNSFGGRGKSSFYSDRGST
GGRGGYQRGGYGGGGGNNRWQEDSRDDEDWSKPSPANERLEAELFSTGNTGINFEKYDDI
PVEATGSNCPPHIDSFHDVDMGEIIMSNIALTHYTRPTPVQKYAIPVIKSKRDLMACAQT
GSGKTAAFLVPVLSQIYTQGPGDAAAAAKNGQDSGKYGRRKQYPLSLVLAPTRELALQIY
EESRKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNY
LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQMLARDFLEDYIFL
AVGRVGSTSENITQKVVWVEDGDKRSFLLDLLNATVIPSDAPDVQEAAVTPGKESLTLVF
VETKKGADALEDFLYREGYACTSIHGDRSQRDREEALNQFRSGRCPILVATAVAARGLDI
SNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEV
PSWLESLGYENQHKGTTGRGRSKRFSSGGFGARDYRQTPGGGGFGGGGRGGPRTGGHGGG
GSRGGFGGGGFGGGNSYGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgataatccacacggtctagatcagcagcttgctggcctagac
ttgaactcagacggacagggaggaggcactggccggcgatacattccacctcacttgagg
aacaaagaggtttccaaaaacgactctccaggaggatgggatggcggacgcagcaacggc
ttcaccaacggttaccatgacaaccgcaacgggggacgcggcgggcctccccgaaatgac
agagggtttggtggtggacaagatggtggaggctggggaagtgctcccagacaagatgca
gcctataacagctttggagggaggggcaagtcttccttctacagtgaccgtggatcaaca
gggggcagagggggttatcagcgtggagggtatggtggtggtggtggtaacaaccgctgg
caggaagactccagagacgacgaggactggtccaaacccagccccgctaacgaacgcctg
gaagcggagttgttctcaaccggcaacactggtattaactttgagaaatacgatgacatt
cctgtggaggccactggctccaactgcccgccacacatcgatagtttccatgatgtggac
atgggggagatcatcatgagtaacattgccctgacccactacacacggcccacccccgtc
cagaaatacgctatccctgtcattaagtctaagagagacctcatggcctgcgctcagact
ggctcgggtaagacggcagccttcctggtgccagtgctgagccagatttacacacagggg
cccggagacgccgcagcggctgccaagaacggacaggacagtggtaaatatgggcgccgt
aagcagtatcccctctctctggtcctggctcccaccagagaactggccctgcagatatac
gaagagtccagaaagtttgcgtaccgctcccgtgtgcgtccctgcgttgtgtacggaggg
gctgacatcggccagcagatcagagacttggagcgaggctgtcatcttctggtggccaca
cctggacgcctcgtggacatgatggagaggggcaagattggcctcgactactgcaactac
ctggtgctggatgaggctgacaggatgttggacatgggttttgagccccagatcagacgc
atcgtggagcaggacaccatgccccctaaaggcatccgtcagaccatgatgttcagcgct
accttccccaaggagattcagatgctggcgcgtgacttcctggaggactatatcttcctg
gctgtgggccgcgtgggctccacctctgagaacatcactcagaaggtggtttgggtggag
gacggtgacaagcggtccttcctcctggacctgctgaatgctacagtcattcccagtgac
gctcctgatgttcaggaggctgcagtgacacctggtaaggagtctctgacgttagtgttt
gtggaaaccaagaagggagcggatgccctggaggacttcctgtaccgcgagggctacgcc
tgcaccagtatccacggagatcgctcccagagagacagggaggaggcgctgaaccagttc
cgctctggacgctgccccattctggtggccaccgcggtggctgctcgtggtctggacatc
tccaacgtcaagcatgtcatcaactttgacctgcccagcgacatcgaagagtacgttcac
cgtattggtcgtaccggtcgtgtggggaacctgggtctggccacgtcgttctttaacgac
aagaacagcaacatcaccaaagacctgctggacatcctggtggaggccaagcaggaagta
ccctcctggctggagagcctgggttacgagaaccagcacaagggcaccacgggacgcgga
cgctctaagaggttttcctctggtggatttggtgccagggactaccgccagacgcccggc
ggcggtggctttggtggtggtggacgcggcggccctcgcaccggaggtcacggaggggga
ggaagtcgtggcggcttcggtggaggtggctttggaggcgggaactcctatggtggtaac
gacgctggctacggtggcaactacagccactccggtagtggaactgactggtggggcaac
tag
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