Oreochromis niloticus (Nile tilapia): 100692965
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Entry
100692965 CDS
T06104
Symbol
ddx42
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100692965 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100692965 (ddx42)
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100692965 (ddx42)
Spliceosome [BR:
onl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100692965 (ddx42)
Complex B
100692965 (ddx42)
Complex C
U2 SnRNP specific factors
100692965 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
100692965
NCBI-ProteinID:
XP_025762417
Ensembl:
ENSONIG00000000734
LinkDB
All DBs
Position
LG4:28835710..28842364
Genome browser
AA seq
909 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPHLTQQSHTSFGGPGSGSGGYGKSQQLPSFYKI
GTKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAE
VENQAAKDMKKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENID
YDSDGNPIPSTTKKIIMPLPPIDHSEIDYPPFEKNFYEEHEELSSLTGTQVLELRHKLNL
RVSGAAPPKPCTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGS
GKTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEMLVSG
SDKWGWLTRRLVEFTSTGSVLIFVTKKANCEELATNLNQEGYSLGLLHGDMDQSERNKVI
SDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTNKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGAESSERSSTSSLLSSTSSYEGYSKPTTGAMGDRMSAMKQAFQAQYKSHFVAASS
GPPKLSAKSSGSSGWTSAGSLSSVPTESANGSERSHSATLSMVGFTSAGSLSSVAPTSQT
SSHHSYTPPAPPSQRESSRDRHGDDRGRHGDSQHRHSDRNDRYSSDDRYGDRDRXRDRDR
DRDRHGDRDRHSSSRHSDSRNGDGSKRDRDDRRSDRDGGDRGSGDGRDRGSDSFAVPEPP
KRRKSRWDN
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtcctggtgtgaagcgaggttttggctttgggggattttca
ctcgcaggaaaaaaagaagagcctcaccttactcagcaatcacacacatcatttggaggc
ccaggatctggaagtggtggatatgggaagagccagcagctcccatcattctacaaaata
gggaccaaaagagctaattttgatgaggaaaatgcatattttgaagatgatgaagaggag
tccagcagtaatgtggatctgccttacatcccagctgaaaactcacccacacggcaacag
atgcagtcaggtggtggctcagacagcgaagatgaccctttggatgctttcatggctgaa
gttgagaaccaagcagctaaagacatgaagaaactagaggaaaaggagaaggagaaaaag
tcagccaagggtattcgtgatgacattgaagaagaagatgagcaagaagcttacttccgc
tacatggcagagaatcccaccgccgggctgacacaggaagaagaggaggaaaacattgat
tatgacagtgatgggaatccaattccctctacaaccaagaaaatcatcatgccacttcct
cctattgaccactcagagattgattatccaccctttgagaaaaacttttacgaagagcat
gaggaactcagcagcttgactggaactcaggtgctggagttgaggcataaactgaactta
cgagtatctggtgcggcccctccaaaaccttgtaccagctttgcccactttaacttcgat
gagcaactaatgcaccaaattcggaagtctgaatatactcagcccacaccgattcagtgt
cagggtgtccccattgcgctgtcaggacgtgatatgataggcattgcaaaaacgggcagc
ggcaaaactgcagcttttatctggccaatgctggttcatatcatggaccaaaaggaactg
gagcctggggaaggacccatcgcagtcattgtgtgccctaccagagagctttgtcagcag
atccatgcagaatgtaagcgctttgggaaagcctactcattgcgttcagtggctgtatat
ggaggaggcagcatgtgggagcaagccaaggctttgcaggagggtgcagagattgtggtg
tgcactccaggtcgtctgatagaccacgttaaaaagaaggccacgtctctgcagagagta
acatacctggtgtttgatgaggctgatcgaatgtttgatatgggctttgaatatcaggtt
agatccattgccagccacgttcgcccagacagacagactcttctgtttagtgctacattt
cggaagaagatagagcggcttgctagagacattttggttgatcccattcgtgtcgtgcag
ggagacatcggagaggccaatgaggatgtgactcaggtagtggagatgctggtcagtggg
tcagataaatggggctggctgactcgccggctggtcgaattcacctccacaggatcggtc
ctcatttttgtcaccaagaaggccaactgtgaggagctagctactaacctgaatcaagag
ggctacagcctgggcctcctgcatggtgatatggaccagagtgagaggaacaaggtcatc
agtgatttcaagaagaagaacttgcccgttctggtggccactgatgtagctgctcgtggt
ctggacatcccgtccattcgcacagtggtgaactacgacgttgcacgagacatcgacaca
cacacccacaggatcggtagaacgggtcgtgctggagagaaaggtgtggcctacactctc
ctcaccaataaagacacatcatttgctggggacttggtgcggaatctggagggagcaaat
cagtctgtttccaaagagctgatggacttggccatgcagaatccctggttcaggaagtca
cgattcaagggtggcaaaggaaagaaactgaacattggtggaggtggtcttggttacaga
gagagacccggccttggggctgaaagttctgaacgtagcagcactagtagcttgttgtct
tccactagtagctatgaaggctacagcaaaccaactactggggcaatgggggatcgcatg
tctgcaatgaaacaagccttccaggctcaatataagagccactttgtggctgcatccagc
ggccccccaaagctcagtgccaagtctagtggctcctcaggatggaccagtgccggcagc
ctgagctctgtgccaacagagtctgccaatggctcagaacggtctcacagtgctaccttg
tccatggtgggtttcaccagtgctggctccctgagctcagtggcccccaccagtcaaacc
agttcacaccacagctacactccccctgcacctccgtcacagagagagagctcacgtgat
agacatggggacgaccgggggcgtcatggtgacagtcaacaccgccatagcgacaggaac
gatcgatacagtagcgacgatcgctacggagaccgggatcgtncacgggatagagataga
gatcgtgaccgccacggcgaccgtgatcgccacagcagcagccgccacagtgacagtcgt
aacggagatggaagcaagagggacagagatgatcggaggagtgatagggatgggggagac
agggggagtggagatgggagggacagaggaagcgatagctttgctgtccctgaaccacct
aaacgtagaaagagcagatgggacaactaa
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