Orcinus orca (killer whale): 101270486
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Entry
101270486 CDS
T05247
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101270486
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oor00536
]
101270486
Glycosaminoglycan binding proteins [BR:
oor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101270486
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101270486
NCBI-ProteinID:
XP_033263472
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Position
14:28268597..28352920
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AA seq
585 aa
AA seq
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MPGRVGGKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGE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NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgcctggacgtgtgggaggaaagggccaaccaggcgagaagggagccccaggagatgcc
gggatgtccatcatcggtccccgcggccccccgggtcagccgggcactcgaggttttcct
ggatttccgggtcccattgggcttgacggcaaaccgggccgccccggaccaaaaggggag
acgggacctccaggacaaaaaggagaaaagggtcagtgtggagagcacccacaccggctg
ctgcctctcctcaattcagtgcggctggctgcacccccagtcattaaaaggcggaccttc
cagggtgaacagggccaggccggcatccaagggccaccaggccctcctggaccaagtgga
cctctggggcccccaggactgccagggcccatggggccacccggcttacctgggcctcct
ggaccgaagggagacccggggatccagggctaccacggccggaagggagaacggggcatg
ccagggatgccgggcaaacacggaacaaagggggctcctggaatcgctgtggccgggatg
aagggtgagcctgggatcccaggagccaagggtgagaagggggctgcgggcgcccctggg
ctactcggcctcctagggcagaagggagaaaaaggtgatgccggcaactccattggagga
ggcagaggggagcctgggcccccagggctccctgggcccccagggccaaagggggaagct
ggagctgatggccgggcgggcgccccaggacggcaaggagacaagggggagcctggagca
gctggagaacagggacctgctggccccaagggctccaagggcgaacctgggaaaggagag
atggtggactacaatggaaacatcaacgaggctctccaggagatccggacactggccttg
atggggccccctggtcttcctgggcagattggcccacccggagctccagggatcccaggc
cagaagggggagattggactgcccggccctcctggacacgatggggaaaagggacctcga
ggcaaaccaggagatgtgggccctcctggtccccaaggccccccaggaaaggctgggcct
gcaggactgaagggagaagatggccttccggggaacccaggagagaagggggagaaaggg
gagatggggcagccaggcccaccgggtctagacggcccaactggggagaaaggagaacca
ggtgaccaagggagacatggagcgaccggattgcctggcccaatcgggctcccaggattc
acgggagagaaaggagaacccggggagaagggtgacccaggagtggaggttcctgggcca
ccagggccagagggacctcccggacctccggggctccaaggcattcctggaccaaagggg
gaagcagggctagatggagcaaaaggagagaagggcatccagggagaaaaaggagaccga
ggtcctctgggattacccggagcttcaggtttggacggcaggcctgggccaccgggtact
ccaggaccaattggagttccaggcccagcgggaccaaagggagagaggggcagcaaaggc
gaccctgggatgacaggaccaacgggagcagctgggcttcctggtttacacggaccaccc
ggggacaaaggaaaccggggacaccgaggttttaaaggagagaaaggggagccggggtta
ccagggctggacggattggatgccccgtgcccactgggtgaagatggcttgccagtccag
ggctgctggaataagtga
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