Ogataea parapolymorpha: HPODL_00143
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Entry
HPODL_00143 CDS
T08137
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
opa
Ogataea parapolymorpha
Pathway
opa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HPODL_00143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opa03041
]
HPODL_00143
Spliceosome [BR:
opa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
HPODL_00143
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
PRP4
NBCH_WD40
WD40_like
WDR54
PROPPIN
Motif
Other DBs
NCBI-GeneID:
25769618
NCBI-ProteinID:
XP_013937067
UniProt:
W1QLE3
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All DBs
Position
I:280472..281758
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AA seq
428 aa
AA seq
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MSELEFKDVLKQVPTIDEDVRRVLQALGEPQTYFGEDKADRRERLVDLLARDEGLRARFA
DMTGLDRGDGSDADEDEEFYTPGGEELYQARVFLANYSLARARDRIKSQTEYYQNHRPVE
VLQERRKYNESLKHIAAQGSQVVSDRCTSVLRYSNDQRYLACGSWDGKTYLMNQQLERLA
VLDGHEEKVGGIDWHPHVTSVVATSGSEGLVLLHNADTQAVVATLKGHEHRVARIQFHPS
GRFLASSSFDLTWRFWDVETNKELYYQEGHSKEVFTLAHQPDGSLLASGGLDGIGHIWDL
RTGKSIMVMEDHVKGIYAMDWRKNGFELLTGGGDANLKVWDIRNNRKPKQNIVAHKKLIS
DIKVSGNDKFMVTTSYDGNLNILSCDNWLVIKQFKAPEKLMCCDIAPDDQTIVSGGWDRC
VNLYNSSL
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcttgagttcaaggacgtgctcaaacaggtcccgacgatcgacgaagatgtg
cggcgcgtgctgcaggccctgggcgagccccagacctactttggcgaggacaaggcagat
cggcgcgaacgactggtcgatttgctcgccagagacgaaggcctccgtgctcgctttgca
gacatgacggggctggaccgcggggacggttcagatgccgacgaagatgaagaattctac
acgccagggggcgaggagttgtatcaggcccgtgtttttctggccaactattcgcttgca
agggctcgtgacagaatcaagtctcaaaccgaatattatcagaatcatcgacccgtggag
gtgctgcaggagcgtcgcaagtacaacgaatcgctgaagcacattgctgcccagggctcg
caggtggtttctgatcgctgcacgtctgtgttgcgctactccaacgaccagagatacctg
gcctgtggctcgtgggacggcaagacgtacttgatgaatcagcagctggaaaggctggcc
gttttggacggacacgaggagaaagtgggtgggatagattggcacccccacgtaaccagt
gtggtagccaccagtggaagcgaagggctggtcctgttgcacaacgccgatacacaagcc
gtggtagccactctcaaagggcacgagcatagagtggcccgaatacaattccatccctcg
ggccggtttctggcgtcttcatcgttcgacctaacgtggaggttctgggatgtcgagaca
aataaagagctatactaccaggaaggccattcgaaagaagtgtttaccttggcgcaccag
ccagacgggtctcttcttgccagtggcggtttggacgggattggccatatatgggacctg
cggacaggaaagtcgatcatggtgatggaggaccacgttaaggggatatatgctatggac
tggaggaaaaacggatttgagcttctcacgggcggtggagacgccaatctgaaagtgtgg
gacattagaaacaaccgcaaaccgaagcagaatattgtggcgcacaaaaagctgatttct
gacataaaagtgtctggtaacgacaagttcatggtgaccacgtcttacgacggcaaccta
aatattctttcctgcgacaactggcttgtgatcaaacagttcaaggcgccagaaaagctt
atgtgctgtgacattgctcctgatgaccagacgattgtatctggcggctgggatcggtgc
gtcaatttgtataatagcagcttatag
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