KEGG   Opitutus terrae: Oter_4308Help
Entry
Oter_4308         CDS       T00689                                 

Definition
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ote  Opitutus terrae
Pathway
ote03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ote00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Oter_4308
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ote03400]
    Oter_4308
Enzymes [BR:ote01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Oter_4308
DNA repair and recombination proteins [BR:ote03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Oter_4308
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: ACB77580
UniProt: B1ZP91
LinkDB All DBs
Position
complement(5585850..5586770)
Genome map
AA seq 306 aa AA seqDB search
MATKTELVVAGTRLMVSNLDKVMYPKTGFTKGNVIDYYVRVADVLLPHLKNRPITLKRYP
DGVAGFFFYEKQCPPHRPKWVKTATVPRGKREGEIHYCVMNDLPALVWAANLADLELHTF
LHKAPAIGRPTAIAFDLDPGPPADIVLCCQVGLWVKAVFDRLGLKSFAKTSGSKGLQIYV
PLNTPVTYDRTKAFAHTLAQALERQFPDVVVSKMLKSLRTGKVLVDWSQNDDHKTTVNVY
SLRAKDQPTVSTPVTWEEVEAAWKKQKADLLVFESEDVVKRIAKHGDLFAPVLQLKQKLP
PIGELA
NT seq 921 nt NT seq  +upstreamnt  +downstreamnt
atggccacgaaaaccgaactcgtcgtcgcgggcacgcggctgatggtgagcaatctcgac
aaggtgatgtatccgaaaacgggcttcaccaagggcaacgtgatcgactactacgtgcgc
gtggccgacgtgttgctaccgcatctgaagaaccgaccgatcacgttgaagcgctatccc
gatggcgtggcgggattctttttctatgaaaagcagtgtccgccccaccggccgaaatgg
gtgaagaccgcgacggtgccgcgcggcaagcgcgagggtgagatccactattgcgtgatg
aacgacctgccggcgctggtctgggcggcgaatctcgcggatctcgagctgcacacgttt
ttgcacaaggcgccggcgatcggccgaccgacggcgatcgcattcgacctcgatccgggg
ccgcccgcagacatcgtgctctgctgccaggtcggattgtgggtgaaggcggtgttcgac
cggctgggtttgaaaagtttcgcgaagacgtccggctcgaaaggcctgcagatctacgtg
ccgctgaacacgccggtgacctacgaccggacgaaggcgttcgcgcacacgctcgcgcag
gcgctggagcggcagtttccggacgtggtcgtgtcgaagatgctaaagtcactgcgcacc
ggcaaggtgctcgtggactggagccagaacgacgatcacaagacgacggtgaacgtctac
tcgttgcgcgcgaaggaccagccgacggtgtcgacgcccgtcacgtgggaagaagtcgag
gcggcgtggaaaaagcagaaggcggatctgctcgtgttcgagtcggaagacgtggtgaag
cgaatcgcgaaacacggcgatctgttcgcgccggtgttgcagctgaaacagaagcttccg
ccgatcggagaactggcgtga

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