Opitutus terrae: Oter_4308
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Entry
Oter_4308 CDS
T00689
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ote
Opitutus terrae
Pathway
ote03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ote00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Oter_4308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ote03400
]
Oter_4308
Enzymes [BR:
ote01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Oter_4308
DNA repair and recombination proteins [BR:
ote03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Oter_4308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACB77580
UniProt:
B1ZP91
LinkDB
All DBs
Position
complement(5585850..5586770)
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AA seq
306 aa
AA seq
DB search
MATKTELVVAGTRLMVSNLDKVMYPKTGFTKGNVIDYYVRVADVLLPHLKNRPITLKRYP
DGVAGFFFYEKQCPPHRPKWVKTATVPRGKREGEIHYCVMNDLPALVWAANLADLELHTF
LHKAPAIGRPTAIAFDLDPGPPADIVLCCQVGLWVKAVFDRLGLKSFAKTSGSKGLQIYV
PLNTPVTYDRTKAFAHTLAQALERQFPDVVVSKMLKSLRTGKVLVDWSQNDDHKTTVNVY
SLRAKDQPTVSTPVTWEEVEAAWKKQKADLLVFESEDVVKRIAKHGDLFAPVLQLKQKLP
PIGELA
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaaaaccgaactcgtcgtcgcgggcacgcggctgatggtgagcaatctcgac
aaggtgatgtatccgaaaacgggcttcaccaagggcaacgtgatcgactactacgtgcgc
gtggccgacgtgttgctaccgcatctgaagaaccgaccgatcacgttgaagcgctatccc
gatggcgtggcgggattctttttctatgaaaagcagtgtccgccccaccggccgaaatgg
gtgaagaccgcgacggtgccgcgcggcaagcgcgagggtgagatccactattgcgtgatg
aacgacctgccggcgctggtctgggcggcgaatctcgcggatctcgagctgcacacgttt
ttgcacaaggcgccggcgatcggccgaccgacggcgatcgcattcgacctcgatccgggg
ccgcccgcagacatcgtgctctgctgccaggtcggattgtgggtgaaggcggtgttcgac
cggctgggtttgaaaagtttcgcgaagacgtccggctcgaaaggcctgcagatctacgtg
ccgctgaacacgccggtgacctacgaccggacgaaggcgttcgcgcacacgctcgcgcag
gcgctggagcggcagtttccggacgtggtcgtgtcgaagatgctaaagtcactgcgcacc
ggcaaggtgctcgtggactggagccagaacgacgatcacaagacgacggtgaacgtctac
tcgttgcgcgcgaaggaccagccgacggtgtcgacgcccgtcacgtgggaagaagtcgag
gcggcgtggaaaaagcagaaggcggatctgctcgtgttcgagtcggaagacgtggtgaag
cgaatcgcgaaacacggcgatctgttcgcgccggtgttgcagctgaaacagaagcttccg
ccgatcggagaactggcgtga
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