Oncorhynchus tshawytscha (Chinook salmon): 112217323
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Entry
112217323 CDS
T05605
Symbol
rev3l
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
112217323 (rev3l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112217323 (rev3l)
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112217323 (rev3l)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
112217323 (rev3l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4683
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
FTCD_N
Motif
Other DBs
NCBI-GeneID:
112217323
NCBI-ProteinID:
XP_042156604
LinkDB
All DBs
Position
LG18:13637748..13688295
Genome browser
AA seq
3040 aa
AA seq
DB search
MFAVRIVTADYYLASPLKDLDVCYNEFRESDVKKVPVVRVFGATPAGQKTCLHLHGIFPY
LYVPYDGYGQQAESYLRQVAFSIDRALNVSMGNPSSNTQHVFKVALVSGMPFYGYHAMER
KFMKIYLYNPQMVKRVCELLQGGAVMNKHYQPHEAHIPYLLQLFIDYNLYGMNLINLGAV
KFRRSQPRREGFPPDRQGCSRPATSPLKSPCTSRLSDSTLGGMFVRWEEDAIACSLVLED
VEKQSTCELEVDAVAVDILNRLEIESKDGGNPGLQAIWEDEKQRRREKNQSSQMETPQSQ
DRGFVASTESERAFMQRFKEILKENEFDVTQSGSVDDAAEEQDPSPAELSLHPDVLTPEL
LQCTPANLVEAHRGSQTDTKRSRGKDQEEAIVDEEAILSLLESSQTFLPLSQKSNHSPIL
DSSQDHAMVDLLAGLEDDGYRAAPMRQNSQHSLPGGGSAHYNSDEEEEGPELEREEAELS
LLMSQRWDSDLPEHSSRRRPGVKEAEESFSDEPQDSSDEEMEWSGNNSLFANLSIPQLDG
AADENSDSSVTDKGSRTHSSLTVADKILGKRNPFPGETVHLEPPSSAKILLDRKHPEHRQ
ALSQDTEDTADKHFLSLSQHSHECSTGFKVNKEIPYIQPVKHPIPCNIANQAEVSQICVD
KMDVVRPLYTYEKKTMALDESDLDVFPFGNGKITQSRKKYSSIKNVEKNRLSILQNHRSF
SLCYSELRNCPSKTELELGQKDCKSPIPRNSINPAPCPIEEDELLAPLEGEMGRGSEEGD
MGELKIRYEDYQENKTERTIVAQQEAHYKFFPSVILSNCLTRPAKKVVGNKLTDGCAKLE
QAEPRRSRLKLGKRRSAAAAQKAKANAGESLASDSQVGMALTSIMPACPKSTDTVAKSVI
EETGPTAPLPELPAPAHSPALAPSPLPAPVVSPTPAPVPACPTEASVEGRLAPLPELPAK
VTGTKASGLPGSKYTLRAKRKMSYDSSEDGEHSGTSRVKHPLALRDNYVRFKDNYILSTQ
ELKYQKRRKMSRKEPREPPIIIKYIIINRFKGQKNMLVKMAKVSAEEQRVVLTPDKLETY
TKMAPLKSFWPKVLESCAVKFPLSEPKANKKQPKRKVNKVNTTTTKKTASGPPKPQVRVR
QGGERPRRTKGLRKASTRPSLPCPRPCYCELANDHATEYSDVMVELGYLSERSPSPTDST
PPRCWSPSDPLMEAMSSDGLMNPLNDPCLSSVCQETPPESLGRGVRNRSRTAKPSSPRRR
TKSANKLSAEVKKESATRRKSTTGTPRRRKKDLETVDGMSVGGDSTNTTTLTRRPRRKKQ
AEQPPVKSRDCDSSQLLFPEDVSPPTESSPKSVPPFQQSSNKTSQIIDGSHGVTGSISLS
QFIEPKSEDYETSIMEVNQSFALKLFQTHPGQLLGCAVKAETTVDECTPPQVKSPMVGKS
KGAPKSGSPHSGLRNGEALPEDTSGLAVLKKLLQKRQQRGGQCLPTQTVGTEISSSTTTQ
PPGPTPDPAAAKPPRARKTPSATPRKPRVSRTTTPKEKKPRSRKGKVNSQPELPVKQEPP
MSDDSPVFLSDPGLDSCYSIEDSLSPELPHNYNFDINAIGIGSQTEFSSLYMGSQFVLTD
KNLPQKFLSDITQEAIPALALSIEKRPDGLSGSGEALQRSLSGPLSPDLFDKPENGESVS
NHLSSLDSERLLRSREWGTSLGKLHGLSHFQGFHCERKELLFSAFDPVLPLPLSSASFAD
NEGSPTGDLPEGNDALTSTTASSSPRSVNSVSQVKTSSQLLRGTGGGAHILKPLMSPPNR
EEILTTLLDLEMSEATFQEPFCSNPSDAPGKPREVGGRKLTVETRLAKELAEFNGDLSLE
GLHFWKTAFSAMTRPGSSHTLGAEATRDQAQLSPSSAGDQKVILLPCRSAPSRERVQLWL
EARKQYEHLQRGRRDIGALERGRLEQIREEQQTDRTEQPTLLHCPALKEEEGFEKPSDIR
TQRDNLSLHISPVEGVETQDSSRGVKPVSDINTRDSEEECYGKSISPDSPDLPPWQQPTQ
PSPSGLDGVEGERRGSDLGSPLSPRLCTSPERSEEKHFLSPSPLPSTKSRGDRERTSPHL
QLHSTPVLRRRRCRGESEPVCSTPLTEDAESPSQRLQHRRGEHTDTLRRVLLTTQMKNQF
AALNVAKKDNSQIEGPSISNSYGFKVSMQNLQDAKALHEVQHLTLMSMELHARTRRDLEP
DPEFDPICALFYCFSSDAPLLDSDKTQLTGAIVVDKDCQDSGQGVRGTAPLLVRSGVSGL
QVTYAVDEKRLFQEVVTIMRRFDPDMLVGYEVQMRSWGYILQRAAALNFDLCQQLSRVPG
DAKENRFAAERDEYGADTMTEIHIIGRIVINLWRIMKTEVTLNNYSFENVAFHVLHQRFP
LYSPRTLSDWFDHNTDLHRWKMVDHYVSRLGGTMQLLQQHDIIGRTSELARVFGIQFYHV
LTRGSQYRVESMMLRVAKPMNYIPVTPSMQQRAQQRVPQCIPLVMEPESRFYSNSMVVLD
FQSLYPSIVIAYNYCYSTCLGHVESMGTPDEFKFGCTSLRVPPELLYQLRNDITISPNGI
AFVKPTVRKGVLPSMLDEILNTRFMVKRSMKTYKQDKALMRLLDARQLGLKLIANVTFGY
TAAHYSGRMPSVEVGDSIVHKARETLERAIKLVNDTKKWGAHVVYGDTDSMFVLLKGATK
EQAFKIGNEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYESLDQKDPVFDAKG
IETVRRDGCTAVSKILERSIKLLFETRDISLVKQFVQRQCVKVLEAKASMQDLTFAKEYR
GSGSYRPGACVPALELTRRMMVYDRRLEPRVGERVPYVIVYGTPGVPLIQLVRRPLEVLQ
DPGLRLNATYYITKQILXPLRRIFQLIGVDVLSWYQELPRVQKASCSMVARGEEVGRKGT
ISQYFTTLHCPVCDELTQLGVCASCRAEPQRVAVTLYQDMRLWESQQDQLLKICRNCSGS
AERQVPCVSLDCPVLYKLSRVNRQLTKAPYLRQLLEQFGL
NT seq
9123 nt
NT seq
+upstream
nt +downstream
nt
atgtttgctgtccgcatcgtcaccgctgactactaccttgcaagtcccctcaaagacttg
gacgtctgttataacgaattcagagaaagtgacgtgaagaaagtaccagtggttcgagtt
ttcggggcaacaccagcaggtcagaagacctgtctccacctccatggcatcttcccctac
ctctatgtgccatacgatggctacgggcagcaggcggagagctacctgcgtcaggtagcc
ttcagcatcgacagggccctcaacgtgtccatgggaaacccctcctccaacacacagcac
gtcttcaaggtggcactggtctccggcatgcctttttatggataccatgccatggagagg
aagtttatgaagatttatctgtacaatcctcagatggtcaaaagggtgtgtgagctgttg
caaggaggcgctgtgatgaacaagcactaccagccccacgaggcccacatcccctacctg
ctgcagctgttcatcgactacaacctgtacggcatgaacctgatcaacctgggagccgtc
aagttccgccggagccagccgcgcagagagggatttcccccagatcgccagggctgcagc
aggccagccaccagccccttgaagagcccctgtacctccagactgagcgacagtacgctg
ggaggaatgtttgtccgctgggaggaggatgccatagcctgttccctggtcctggaggat
gtggagaaacagagcacatgtgagctggaagtggatgctgtggctgtagacatcctcaac
cgtctggaaatagagagtaaggacggcggcaaccctggcctgcaggccatctgggaggac
gagaagcagaggcgacgagagaagaaccagtcatctcagatggagaccccacagtcacag
gatcgtgggtttgtcgcctcgacggagagcgagagggccttcatgcagagattcaaggag
atcctgaaggaaaatgagtttgatgtgactcagtccgggtctgtggatgacgcggcagag
gagcaggatccatccccagctgaactgtctctacaccctgatgtcctgaccccagagctg
ctgcaatgtacaccagccaacctggtggaggcgcatagaggctcccagacagacactaaa
aggagccgtggtaaagaccaggaggaggccattgtggatgaggaggccattctgagtctg
ttggagagcagtcagacctttctcccactctcccagaaatccaaccactcacccatacta
gacagcagccaggaccatgccatggtggacctgctggcaggcctggaggatgatgggtat
cgggcggcccctatgaggcagaactcccagcattccctgcccgggggagggagcgctcac
tacaacagtgacgaggaggaggaggggccagagctagagagggaggaggcagaactcagt
cttctgatgtcacagagatgggacagcgaccttccagaacattcttctagacggagacct
ggtgtgaaggaggccgaagagagcttcagtgacgagccccaggactcatcagatgaggag
atggaatggagtgggaacaactctctttttgccaacctctccattcctcagctggacggt
gctgcggatgagaacagtgattcatcggtaacggacaaaggctccaggacccactcgtcc
ctcaccgtcgccgataagatcctggggaagaggaacccctttcctggggagacagtccac
ctggagcccccgtcttcagccaagatcctcctagaccgcaaacacccggagcaccggcaa
gccctctcacaggacaccgaggacacagctgataagcacttcctctccctcagccaacac
agtcatgagtgttccacagggttcaaggtgaataaagagataccttacatccagccggtc
aaacaccccattccctgcaacatcgccaaccaggccgaggtctctcagatctgtgtggac
aaaatggacgtcgttcggcctctctacacctacgagaagaagacgatggctctggatgag
tcggatctggacgtctttccgttcggcaacgggaaaatcacccagagcaggaagaagtac
agcagcatcaagaatgtggagaagaatcgtctgtccatcctgcagaaccacaggagcttc
tccctgtgttactctgagctgaggaactgccccagcaagacggagctagagctgggtcag
aaagactgtaaaagccccataccgaggaacagtataaacccagccccctgccccatagaa
gaggacgagctcctggccccgctggagggtgagatgggccgaggcagcgaggagggggac
atgggcgagctgaagatccggtacgaggactatcaggagaacaagactgagaggaccata
gtagcccagcaggaggcacactacaagttcttccccagtgtcattctctccaactgcctt
accaggcccgccaagaaggtggtgggcaacaagttgaccgacggctgcgccaagctagag
caggcagagccacgcaggtccaggctaaagctgggcaagaggaggtcggctgcagcagcc
cagaaagctaaagcgaacgctggggaaagcctagcctctgacagccaagtgggcatggcc
ttaacgtccatcatgcctgcctgtcctaagagcacggacacagtggcaaagtcagtcata
gaggagactggacccacagcaccacttccagaattgcctgctcctgcccattcccctgcc
ctggccccttctcctctaccagcccctgtcgtgtcccctacaccggccccagtccctgcc
tgtcccactgaggcgtctgtggagggcaggttggccccactgcctgagctccctgctaaa
gtgaccggcaccaaagcctcaggtctgcctggcagcaagtacaccctgagggccaagcgc
aagatgagctacgacagcagcgaggacggggaacactcgggcacctctcgcgtgaaacac
cctctggccctccgagacaactacgtccgcttcaaagacaactatatcctcagcacgcag
gaactcaagtaccagaaacgacggaagatgtccagaaaggagccaagggagccacccatc
atcatcaagtacatcatcatcaacaggttcaagggtcagaagaacatgttggtgaagatg
gccaaggtgagtgctgaggagcagcgggtggtgctcacaccagacaaactggagacgtac
actaaaatggcccctctcaagtccttctggcctaaggttctagagtcttgtgcggtcaag
tttcctctcagtgagcctaaggctaataagaaacagcccaaacgaaaggttaataaggtc
aacaccaccaccactaagaaaacggccagtggcccacccaaacctcaagtccgagtcagg
caggggggtgagaggcctagaaggactaaaggcctcagaaaagcctcgactcggccctct
ctgccgtgcccgcggccatgttactgtgaactggccaatgaccacgccactgagtactct
gatgtgatggtggagttgggttatctgtctgagagatcccctagccccactgattcaacc
ccacctcggtgttggtcccccagtgacccccttatggaagccatgtcctctgatgggttg
atgaacccattaaatgatccctgtctcagttctgtgtgtcaggaaaccccccctgagtct
ttaggccgaggtgtgcggaaccgaagccggactgctaaacctagcagcccaagaagacgg
actaagtctgctaataagctttcggcagaagtcaaaaaggagagtgccacgagaaggaaa
agtactactgggactccacggaggagaaagaaagatctagaaacagttgatgggatgagt
gtgggtggtgactctactaacaccaccacgttaactcgaaggcctcgtaggaagaagcag
gctgaacagccccctgtaaaaagcagagactgtgacagttcccagctcctcttcccagag
gatgtgtcgcctcctactgaatcctctccaaagtccgtaccaccctttcagcagtcatct
aacaaaaccagccagatcattgacggctcccatggggtcactggctctatatccctatcc
cagttcattgaaccaaagtccgaggactatgagacctccataatggaggtgaaccaaagc
tttgctctcaaactcttccaaacgcatccaggccagctgctgggttgtgctgtgaaggca
gaaactacagttgatgagtgcacaccccctcaggtgaaatcccccatggtggggaagagt
aagggagctcccaaatcagggtcccctcactcaggccttaggaacggggaggccctacct
gaggatacctctggcctggctgttctgaagaagctcctgcagaagaggcagcagagaggt
ggtcaatgcctcccaacccagacagtgggcacagagatctcctcctccactacaacacag
ccccctggccccacaccagaccctgctgcagccaagccaccaagagccaggaaaactccg
tcagccaccccacggaaaccccgggtctcaagaactacaactcccaaggagaagaagccc
agaagcaggaagggtaaggtgaactctcagccggagttacctgtgaagcaggagccacca
atgtcagacgacagcccagtgttcctgtcagacccaggcctggacagctgctactccata
gaggacagcctctccccagagctcccacacaactacaacttcgacatcaacgctatcggc
attggcagccagacagagttctccagcctgtacatgggcagccagtttgttctgaccgac
aagaatctgcctcagaagttcctgagtgacatcacccaggaggccatccctgcgctggcg
ctgagcattgagaagaggcctgatgggctgtctgggtctggggaggcgctccaacgaagc
ttgtctggacctctgagtcctgacctctttgacaagccagaaaacggtgaatctgtctcc
aaccatttatcttctctggattcagagaggttactgaggagcagagagtggggcacgtcc
ctgggcaaactccatggcctcagccacttccagggctttcactgtgagaggaaagagctg
ctgttctctgccttcgaccccgtcttaccactgcctctgagctctgcgtctttcgcagac
aacgaaggatcaccgaccggagacttaccggaggggaatgatgctttgacgtcgaccacg
gccagtagttctccgcgctctgttaactccgtatcccaggtgaagaccagcagccagctc
ctcagggggacaggagggggagcccacatcctcaagcccctcatgtcccctcccaaccgg
gaagagatcctcaccactctcctggacctggagatgtctgaggccacctttcaggagccc
ttctgcagcaacccctcagacgccccagggaaacccagggaggttggtggacgtaagttg
acggtggagaccaggttggccaaggagctggctgagttcaacggggacctatccctggag
gggctacacttctggaagaccgccttctccgccatgacccggcccggctcctctcacacc
ctgggagcagaggccaccagagaccaggcccagctcagcccctcttcagccggggaccag
aaggtcatcctgctgccctgtaggagcgcccccagccgtgagcgcgtccagctatggctg
gaggccaggaaacagtacgagcatctgcagaggggcaggagagacattggagcactggag
aggggaaggttagaacagataagagaagagcagcaaacggacaggactgaacagcccact
ctgctccattgtccagcattgaaggaagaggaggggtttgagaagccctccgatatcagg
actcagagggacaatctctctctacatatatcacctgttgagggggtggaaactcaggac
agctccagaggagtgaagcctgtatcagacattaacaccagagactctgaggaggagtgt
tatggtaaatccatctctccagactcgccagacctgccgccctggcagcagcccacgcag
cccagcccctcaggactagatggagtagagggggagaggagagggtcagatctagggtca
cccttgtcccccaggctctgcacctccccagagaggagcgaggagaagcacttcctcagt
ccctctcccttgccttccacgaagagccgaggggacagggagaggaccagcccccacctt
cagctccacagcaccccagtcctcaggagacgcaggtgcaggggcgagtctgaacccgtg
tgcagcacccctttgactgaagacgcggagtccccatctcagagactgcagcacaggaga
ggggaacacacagacaccctgaggagagtgctactgaccacacagatgaagaaccagttt
gctgctttgaacgttgcaaagaaagacaactctcagatcgagggccccagcatcagcaac
tcgtacggcttcaaagtcagcatgcagaacctccaggacgctaaagccctgcacgaggtt
cagcacctgacgttgatgagcatggagcttcacgctcgaacccggcgggacctggagccc
gaccctgagtttgaccccatatgtgccttattctactgcttcagctctgacgcaccccta
ctggactcagacaagacgcagctgactggggccatcgttgtggacaaggactgccaggac
agtggccaaggtgtcagaggaacagcacccctgctggtcagatctggggtctcaggactg
caggtcacctacgctgtggatgagaagcggctgttccaggaagttgtcactatcatgagg
aggtttgacccagacatgctggtaggctatgaagtccagatgcgttcctggggctacatc
ctccagcgggcagcggcactcaactttgacctttgccagcagctctccagggtgccaggt
gacgccaaggagaaccgtttcgccgcggagagggatgagtacggagcggacaccatgacg
gagatacacatcatcggccgcatcgtcatcaacctgtggaggatcatgaagaccgaggta
acgttgaacaactacagttttgagaatgtggccttccacgtcctacaccagcgcttcccc
ctgtacagcccccgcaccctgtcggactggttcgaccacaacacggacctgcacaggtgg
aagatggtggaccattatgtgagccggttgggcggcaccatgcaacttctccagcagcac
gacatcatcggcaggaccagcgagctggccagggtgttcgggatccagttctaccacgtg
ctcaccaggggatcccagtaccgtgtggagtccatgatgctgcgcgtggccaagcccatg
aactatatccccgtgacgcccagcatgcagcagagagcccagcagagggtgccgcagtgc
atcccactggtcatggagcccgagtcgcgcttctacagcaactctatggtggtgctggac
ttccagtcgctctacccctccatcgtcatcgcctacaactactgctactctacctgcctg
ggccacgtggagagcatgggaacgcccgatgagtttaagtttggctgcacctccctgcgg
gtcccccctgagctcctctaccagctccgcaatgacatcaccatctctcccaacggcatc
gcttttgtcaagcccacggtgaggaagggggtcctgcccagtatgttggatgagatcctg
aacacgcggttcatggtgaagcgctccatgaagacttacaagcaggacaaggccttgatg
aggctcctggacgccaggcagctgggactcaagctcatcgccaacgtcaccttcggctac
accgccgctcactactccggacgtatgcccagcgtagaggttggagatagtattgtccac
aaggccagggaaaccctggagagggccatcaagctggtcaacgacaccaagaagtgggga
gcccacgttgtctatggtgacacagacagcatgtttgtcctgctaaagggagcgactaaa
gagcaggccttcaagatcggcaacgagatcgccgaggcggtgactgctaccaaccctaaa
cctgtcaagctgaagtttgagaaggtgtacctcccgtgcgtgctccagacgaaaaagcgc
tacgtgggctacatgtacgagagcctggaccagaaggaccccgtgtttgatgccaagggg
atcgaaactgtgcgccgagacggatgcactgctgtttccaagattttggagcgttccatc
aagctgctgtttgagacgcgggacatcagcctggtgaagcagtttgtgcagcgtcagtgt
gtgaaggtgctggaggccaaggccagcatgcaggacctgaccttcgctaaggagtacagg
ggcagcggctcctaccggccgggggcctgcgtccctgctctggagctcaccaggcgtatg
atggtttatgaccggcgcctggagccacgggtgggcgagcgggtgccctacgtgatcgtg
tacgggacgcccggcgtgcccctcatccagctggtgcggcggcccctggaggtgctgcag
gacccgggcctgcgcctcaacgccacctactacatcaccaagcagatcctgnccccgctg
aggcgcatcttccagctcatcggtgtggatgtgctcagctggtaccaggagctccccagg
gtccagaaggcgtcatgctccatggtggccagaggggaggaagtggggaggaaggggact
atctcccagtacttcaccacgctgcactgtcctgtgtgtgacgagctcacccagctaggg
gtgtgtgccagctgccgtgccgagccccaacgcgtggccgtcactctctaccaggacatg
cgcctttgggagagccagcaggaccagctgctaaagatctgtcggaactgcagcggcagt
gcggagcggcaggttccgtgtgtgtctctggactgtccggtgctctacaagctgtcccgg
gtcaacagacagctcaccaaggccccctacctccgacagctcctggagcagttcggattg
tga
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integrated database retrieval system
