Oncorhynchus tshawytscha (Chinook salmon): 112220152
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Entry
112220152 CDS
T05605
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112220152
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112220152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112220152
03009 Ribosome biogenesis [BR:
otw03009
]
112220152
04131 Membrane trafficking [BR:
otw04131
]
112220152
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112220152
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112220152
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112220152
Membrane trafficking [BR:
otw04131
]
SNARE
SNARE associated proteins
Others
112220152
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112220152
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112220152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_5
AAA_2
TIP49
AAA_22
AAA_14
RNA_helicase
AAA_28
Vps4_C
nSTAND3
AAA_18
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_7
ATPase
Bac_DnaA
DUF815
ABC_tran
AAA_24
NB-ARC
ResIII
TsaE
Zeta_toxin
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
bpMoxR
KAP_NTPase
UFD1
Zot
Motif
Other DBs
NCBI-GeneID:
112220152
NCBI-ProteinID:
XP_024237591
LinkDB
All DBs
Position
LG20:complement(34593771..34612385)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKTRPNRLVVDESLNEDNSVVSLSQAKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPNPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANQTHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNISWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNAGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILGAN
LRKSPIAKDVDLDFLAKMTNGFSGADLTEICQRACKMAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPTNSAPG
AGPSQGSAGGSGGTVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaggaggagaatcgaaaaatgatgatctatccacagcgattttaaagcaaaag
accaggcctaaccggttggttgtggatgaatctctcaatgaggacaacagtgtggtctcg
ctgtctcaggccaagatggacgagttacagctgttcaggggagacacagtgctgatgaaa
ggaaagaagagacgggagacggtctgcatcgtgctctctgatgacacctgctccgacgag
aaggtccgcatgaacagagtggtccgcaacaacctaagagtccgcctgggagatgttatc
agtattcagccatgcccagacgtgaagtacgggaagcggatccacgttctgcccattgat
gacactgtggaggggatcacagggaacctgtttgaggtctacctcaagccctacttcctg
gaggcctacaggcccatcaggaaaggggacatcttcctggtgaggggaggcatgcgagct
gtggagttcaaggtagtggagacggaccccaacccctactgcattgtggccccagacaca
gtcatccactgtgagggggagcccatcaaacgagaggatgaagaggagtctctgaatgag
gttggctatgatgacattggtggtgtgaggaagcagctggcccagattaaggagatggtg
gagctgcccctgagacacccagcactgttcaaggccattggcgtcaagcctccaagggga
atcctgctgtacggaccccctggaacaggaaagactctgatcgcccgtgctgtggcgaat
gagactggagccttctttttccttatcaatgggcctgagatcatgagtaaactggccgga
gagtctgagagtaacctgaggaaggccttcgaggaggctgagaagaatgcccctgccatc
atcttcattgatgagctggatgccattgcaccaaaaagagaaaagacacacggtgaggtg
gagaggcgtatcgtgtcccagctcctcacactcatggacggccttaagcagcgtgctcac
gtcatcgtcatggcagccaccaacagacccaacagcattgacgccgccctcaggcgattt
gggcgttttgacagggaggtggacattggcattcctgacgcaacaggcagactggagatc
ctccagatccataccaagaacatgaaactgtccgacgatgtcgacctcgagcaggttgcc
aatcagactcacggccacgtgggtgctgacctggctgctctgtgctctgaagccgctctg
caggccatcaggaagaagatggatctcatcgaccttgaggacgagaccatcgacgcagag
gtcatgaactcccttgccgtcaccatggacgacttcagatgggctctgagccagagcaac
ccatctgctctgagagagactgtggtggaggtgcccaacatcagctgggaggacatcggt
ggtctggaggatgtcaagagggaactccaggagcttgtacagtacccagtggagcaccca
gacaagttcttgaagttcggcatgaccccatccaagggcgtgctgttctacggaccccca
ggttgcggtaagaccctgctggccaaggccatcgccaacgagtgccaggccaacttcatc
tccatcaaagggcccgagttgctcaccatgtggttcggcgagtctgaggccaatgtccga
gagatcttcgacaaggctcgccaggccgccccctgcgtgctcttctttgacgagctggac
tctatcgccaaggcgcgtggcggcaacgcgggtgatggtggcggagcagccgaccgtgtc
atcaaccagatcctgacggagatggacggcatgtccagcaagaagaacgtcttcatcatc
ggcgccaccaacaggcctgatatcatcgacccggccatcctgaggcccggcagactggac
cagctcatctacatccccctgccagatgagaagtcccgcatcaacatcctcggagccaac
ctcaggaagtcacccatcgccaaggatgtggacctggatttcttggccaagatgaccaat
ggtttctctggagctgacctgacagagatctgccagagggcctgtaagatggccatcagg
gagtccatcgagaacgagatcaggagggaaagggagaggcagaccaacccctcagccatg
gaggtggaggaggacgaccctgtcccagagatccgtaaggaccactttgaggaggccatg
cgtttcgcccgccgctccgtcagcgacaacgacatccgcaaatacgagatgttcgcccag
acgttacagcagagcagaggcttcggaagtttccggttccccactaactctgcgccaggg
gccgggcccagccagggctctgctggtggcagcggtggcacagtcttcaacgaggacaat
gacgacgacctctatggttaa
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