Oncorhynchus tshawytscha (Chinook salmon): 112221559
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Entry
112221559 CDS
T05605
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112221559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112221559
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112221559
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112221559
Complex C
U5 SnRNP specific factors
112221559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AstE_AspA
Motif
Other DBs
NCBI-GeneID:
112221559
NCBI-ProteinID:
XP_042160307
LinkDB
All DBs
Position
LG22:complement(24667473..24681563)
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AA seq
702 aa
AA seq
DB search
MDLRTYNSELLLSSQMAGESTDKNHAAETSGVKDKERKCKGSPSMDWKPRQRSRERNRSK
SAERSVSPKSKDRIKREKDLKKEEDDEKKKKGKVQPLSLEELLAKKKADEEAEAKPKFLS
TAECEAEALKRRQQQTEERKNTIHEDRKKRRIFQDIGRKMMGEGLSVRFPEDPQERDRRE
RRERMERENNGDQTYDGKQKIREEKDKGKELQAIKWGFSDLVQSQALIWSGTKKRQRTRH
LNDRKFVFEWDASEDTSTDYNPIYKEKHQVQLYGRGFIAGIDLKQQKRDQSHFYVDMMET
RRTLEEEQEEVRLKKVRKKEAKQRWDDRHWSQKKLEEMADRDWRIFREDYSITTKGGKIP
HPIRNWKEYNLPPHIVEVIDNCGYKLSCEDFICTHTDTHDPTPIQRQAIPIGLQNRDIIG
VAETGSGKTAAFLIPLLVWITTLPKDERMEDSDQGPYAVILAPTRELPQQFEEETLKFGK
PLGICTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVVENRYLVLGRCTYVVLDEADP
MIDMGFEPDVQKILEYIPVTNQKLDTDEAEDPEKMKMNFEMGKHKYRQEEAAGSYEPPII
IFVNQKKGVDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILAATDVAGRGI
DIHDVSMVLNCDMAKNIEGTAALAIVALVVPLLGIMLEQPVL
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggacttgaggacctacaactcagaactccttctttcctcacagatggctggtgaatcg
accgacaagaaccatgcagcagagacctcaggagtcaaggataaggagcggaaatgcaaa
ggctccccatccatggactggaaaccacgccaacgctctcgtgaacgcaaccgatccaaa
tcggcagaaagaagcgtctcccccaagtccaaggacaggataaagagggagaaggatttg
aaaaaagaggaagatgatgagaaaaagaagaaaggaaaggtacagccactctctctagaa
gagcttctagccaagaagaaagcggacgaggaggccgaggcgaagcccaagtttctgtcc
acggcagagtgtgaggcggaggctctgaaaaggaggcagcagcagactgaggagaggaag
aacactatccatgaggacaggaaaaagaggaggattttccaggacatcgggaggaagatg
atgggtgaaggtttgtctgtccgtttcccggaggacccccaggaaagggacagacgagaa
cggagagagaggatggagcgtgagaacaacggggatcaaacgtacgacggaaaacagaag
atcagagaggagaaggataagggcaaggagctccaggccatcaagtggggattctctgat
ttagttcaatcacaagctttgatatggagtgggactaagaagcgccagcggacacgccac
ctgaatgacagaaagtttgtctttgagtgggacgcctctgaagacacttctaccgactac
aaccccatttataaggagaagcaccaggtccagctgtatgggcgcggcttcatagctggt
attgacctgaagcagcagaagagagatcagtcacatttctacgtggacatgatggagacg
agacgcacactggaggaggagcaggaggaggtgcggctgaagaaggtgcgtaagaaggag
gccaagcagcggtgggatgacagacactggtcccagaagaagctggaggagatggcggac
agggactggcgtatcttcagggaggattacagtatcaccacaaagggtggcaagatcccc
caccccatcaggaattggaaggagtacaacctgcccccacacatcgtggaggtcattgac
aactgtggctacaagctcagctgtgaagacttcatatgcacacacacagacacacacgat
ccaacgcctatccagagacaagctatacccattggcttacagaatcgtgacatcatcggc
gtggctgagactggtagcggtaaaacagctgctttcctcatccccctattggtctggatc
actaccctgcccaaggatgaaaggatggaggactcggaccagggtccgtatgcagtgatc
ctggcccccacccgtgagctgccccagcagtttgaggaggagacccttaagtttggtaaa
cctctggggatctgcaccgtggccgtcatcggaggtatctccagggaggaccagggcttc
cgcctccggatgggctgcgagatagtgatagccaccccgggtcgtctgatagacgtagtg
gagaacagatacctggtcctgggccgctgtacctacgtggtactggacgaggctgacccc
atgatagacatgggcttcgagcctgacgtccagaagatcctggagtacatccctgtgacc
aatcagaaactagacacggacgaggcagaggacccagagaaaatgaagatgaacttcgag
atgggaaaacacaagtacagacaggaagaggctgctggaagttacgagccgcccatcatc
atcttcgtcaaccagaagaagggtgttgacgtgcttgccaaatctctggagaagatgggg
tacaatgcttgcacgttgcacggaggcaagggccaggagcagagagagtttgctctgtcc
aacctgaaggctggggccaaggacatcctggcggccaccgacgtggctgggagaggtatc
gacatccacgatgtctccatggtgctcaactgtgacatggccaagaacatcgaggggacg
gctgcgttggcgattgttgcgctggttgtgcccctgctgggcatcatgctggagcagcct
gtcctgtga
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