Oncorhynchus tshawytscha (Chinook salmon): 112223274
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Entry
112223274 CDS
T05605
Name
(RefSeq) cadherin-23-like
KO
K06813
cadherin 23
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112223274
04515 Cell adhesion molecules [BR:
otw04515
]
112223274
Cilium and associated proteins [BR:
otw03037
]
Primary cilia and associated proteins
USH complex and associated proteins
112223274
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Major cadherins
112223274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_3
Sde0182_C
Bact_surface_Ig-like
Motif
Other DBs
NCBI-GeneID:
112223274
NCBI-ProteinID:
XP_042161132
LinkDB
All DBs
Position
LG24:1692941..1829114
Genome browser
AA seq
1868 aa
AA seq
DB search
MDSGVPPRYRDLPLIINILDVNDNTPVIESQVGYNVSISENVGGGTSVLRVVATDRDIGP
NAMLFYYITSGNKDLTFRMDRMTGEMVTRPSPPDRERQQEYRLIMMVEDDGTPSLSSSTT
IYVRIVDENDNAPEFPEEEYVTVLSEGPNTVGAIIATVTAIDPDEGLNGTLRYAIDHGNL
DITFHINHTTGRIVAVKELDFEISNGHYALIVTATDQCPIHALRLTSSTTVLVNVLDVND
VTPTFTKPYEGPFEITEGQLGPRVWTLKAIDLDSGLNGKVEYSITAGDPQNEFVVSPVEG
ELRVRRDVELDRETTPFYNITVMAKDLGKPPRISMVVVGVQVLDINDNDPMLLNLPHNTS
VREGASIHTSVTTVQARDMDSGRNALLTYNITAGNHDGAFYINDTTGMVQVNRPLDRERV
GEYRLTITVKDNPENPRIARRDSDMLVITVLDDNDNRPIFTQTSYRAEITENSPSGSAVS
VLNGPVLAEDKDIGPNAVVRYRLLGTRLDLFTVDSDTGVVRVRQKALLDREAFVEPRVEL
LLVGEDVGGLNSSVPLTVTIMDQNDNPPVFNPPSLTVHLPENSPTGVVVTQLSASDADSG
SNAWLLYRLESGAQDRFVVDSLSGAVLVGNSTLDREERGSYRLVVVATDRGTPSLSGTAT
LSVILDDVNDSRPRFLEPVTTININESTPPGVVVATLTAKDPDLRPRLEYYIISVEAKDD
GNNPVVGLQESFGIDFHTGAVFVRNPLNRELVATFEILVSVHDNASDVIDMSVSVPNARL
IVNVLDVNDNAPRFRPFGVANFSEKILEGAQPGTTLLSVSAVDPDKGPNGQVIYQLLHLP
RGDYLRLEDPSTGKIVAYRTVDFEQVQWLNFTVRAQDHGSPPKVAELPVYLRIVDVNDNN
PIFTQPSYQKPVFEDVDLGTVIVRVRATDADSGLFSVIEYSLVDGEGKFGITPSTGDIYI
LSPLDRETKDHFTLTAIARDNPGGSPNNRRENSVQVLVTVLDVNDFRPRFSERAFETSVF
ENEPSGTSVITLTATDLDEGQNGLLSYSMQGPGADAFSLDADTGLVRSLRLLQSFEHFNL
TVVATDQGRPPLWGTATLHIIIIDVNDNRPMFVRPTNGTIMHIMEEQPPGLLVYEVFATD
GDEGVNGEVRYAFLQTGAGNRDWDNFHIDAITGVITTAIKLDREKQALHSLIVVAYDLGQ
PVPYETTQPLQVALLDIDDNEPVFFKPPRGSLPYQTMSVAEHSTPGTVVGNVTGAVDADE
GSNAVVYFFIAGGDTEGNFGLSPGGVLKVKKDLDREDISVYSIIIKASSHRNWAPARGQR
SAWGRALDPSRDPTLQEVRIYLEDINDQPPRFTKLEYTTGVAADAKVGSDLIRVQAIDND
VGNNSLVLYHVLSIRYIKLQSNDTEDIGNSFIIGETDGIIRTYDLFTAYDPGYFVVEVLA
RDLAGHSDIAMVGIYILRDDQRVKIVINEIPERVRQFQEEFINLLSNITGAIVNTDDVQF
HVDKKGRVNFAQTDVLIHVVNKHTNRILDVEKVIQMIDENKEQLKNLFRNYNILDVQPAV
SGRAPDDLTTLQMAIIILAVLLFLAAMSFIFMNWYYRTVHKRKLKAIVAGSTGKQGLMDI
LDLPNTNKYSFEGANPVWLDPFCRNLELAAQAEHEDDLPENLSEITDLWNSPVPTHGTFG
RKPQAKPEDDRYLRAAIQEYDNIAKLGQIMREGPVKGTLLNVVLDDYLRLKKLFAARLVT
KSTSQGDQSSVTELIQSDLDDDEDERVSMGGSWGTLRFKHKLPVEMRGPDGVHVVHGSMG
TLLTSDLNSLPEDNQLALARSMEALNATDRGLYTEHNARTESAKSTPLHHNNKVDDTLSE
SPLEITEL
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atggacagcggtgtgcctccccgctacagagacctccctctaatcatcaacatcctggac
gtcaatgataacacacccgtcattgagagtcaggtgggctacaatgtcagtatcagcgag
aatgtgggaggcggtacgtccgtcctgcgcgtggtggccacagaccgtgacatcgggccc
aacgccatgctcttctactacatcacctcgggtaacaaggatctcaccttccggatggac
cgcatgaccggtgagatggtgacacgaccatccccacctgaccgcgagcgccagcaggag
taccggctgatcatgatggtggaggacgacggcacgccgtcactatcgtcatcgactacc
atctacgtgcgtatagtggatgagaacgacaacgcgccagagtttccagaggaagagtat
gtgacggtgctgagcgagggccccaacaccgtgggtgccattattgccacggtaaccgcc
atcgacccagacgagggcctcaatggcactctgcgatatgccatcgaccacggaaacctg
gacatcaccttccacatcaatcacactaccggacggattgttgcagtgaaggagctggac
tttgagatcagcaatggacactacgcacttatcgtcacagcaacggaccagtgtcctatc
catgccctccgcctgacttccagcaccacggtgttggtgaatgtcctggatgtgaacgat
gtgacccccaccttcaccaagccctatgaggggccctttgagataacagagggccagctg
gggcctcgagtctggaccctcaaggccatcgacctggactctgggctcaacggcaaagtg
gagtacagcatcactgccggagacccccagaatgagtttgtggtatctccagtggaggga
gagctgcgtgtgaggagagatgtggagctggacagagagaccacacccttctacaacatc
actgtcatggccaaagacctgggcaaaccaccacgcatcagcatggtggtggtgggtgtc
caggtgctggacatcaatgacaatgaccccatgctgttgaacctgccccacaacaccagt
gtgagagagggggcgtccatccacacctcggtgaccacggtccaagcacgggacatggac
agtggacgcaatgccctgctcacctacaacatcactgccggaaaccacgatggagctttc
tacatcaatgacactacagggatggtgcaggtgaacaggcctctggacagagaaagggtg
ggggagtacagactgaccatcactgttaaagacaaccctgagaatccccgcatcgctcgc
cgggactcagacatgctggtgatcacagttctggatgataatgacaacaggcccatattc
acacagaccagctaccgggctgagatcactgagaactccccctcaggcagtgctgtgtca
gtgttgaatggaccagtgttggctgaggacaaagacattgggcccaacgctgtggtcagg
taccgtctgctgggaacaagactggacctcttcactgtggactctgatacaggtgtagtt
cgtgtgcgacagaaggctctgttggaccgcgaggcgtttgtggagccgcgggtggagctg
ctcctggtgggggaggatgtgggaggactcaacagcagcgtgcccctcactgtgacaatc
atggaccagaacgacaaccctcctgtctttaacccccccagcctcactgtgcacctccct
gagaacagccccactggtgtggtggtgacccagctgtctgccagtgatgctgattcaggc
tctaatgcctggctgctttaccggctggagagcggtgcccaggaccgctttgtagttgac
tccctctctggtgccgtcctggtgggaaactccacccttgaccgcgaggagcgtggctcc
taccgcctggttgtcgtggctactgaccgtggcacaccctcattgtcgggcacggccacc
ctgtcggtcatcctggatgatgtcaacgactcacgaccacgtttcctggaacccgtgaca
actattaacataaatgagtctacaccaccaggcgtggtggtggcaacgctcaccgcgaag
gaccctgacctacgaccccggctggaatattacataatctctgtggaggcgaaggatgat
ggaaataaccctgttgttgggctgcaagagtcattcggcatcgatttccacacgggtgct
gtgtttgtgcgtaacccactcaacagagagctggtggccacctttgagattcttgtgtcg
gtgcatgacaacgccagtgatgtcatcgacatgtcagtcagcgtacctaatgcgagactg
atagtgaacgtgctggatgtgaatgacaacgccccgcggttcagaccctttggagtggcc
aacttctcagagaagattctggaaggcgctcagccaggcaccactctgctgtccgtgtca
gctgtggacccagacaaaggccctaacggacaggtcatctaccagctgctacacctgccc
agaggggactacctcagactggaggacccatcaactggtaagatcgtagcctaccggacg
gtggactttgagcaggtacagtggctgaacttcacagtgagagcccaggaccacggcagt
ccacccaaagtggctgagcttcctgtctaccttcgtatagtagatgtcaatgataacaac
cctatctttacacaaccctcttaccagaagccagtgtttgaggatgttgacttgggcacg
gtcatagtgagagtcagagccacagatgcagactctggcctcttctctgtcatcgagtac
agcctagtagatggagagggcaagtttggcatcactccctccactggtgacatctacatt
ctgtctccactggacagagagactaaagaccacttcaccctgacagccatcgctagggac
aaccctggcggcagccccaacaaccgacgagagaactctgttcaggtcttggtgaccgtt
ctggatgtgaatgacttccgtccgcgtttctcagagcgggcctttgagaccagtgtattt
gagaacgagcccagtgggacgtctgtgatcacgctgactgccactgacttggacgagggg
cagaacggcctgctctcttacagcatgcagggcccgggggcagatgccttctctctggat
gctgacacaggtctggtgcgttctctccgtctgctgcagtcctttgagcactttaacttg
acggtggtggctacagaccagggaagaccacccctctggggcaccgccaccttacacatc
atcatcatagacgtcaacgacaacaggcccatgttcgtcaggcccaccaacggcaccatc
atgcacatcatggaggagcagcccccaggcctgctggtgtatgaggtgtttgcgacagat
ggggatgaaggggtgaatggagaggtgcgctatgctttcctccagacaggggctgggaac
agagactgggataacttccacattgatgctattacaggagtcatcaccaccgccatcaaa
ctggaccgagagaagcaagccctgcacagtctgattgttgtggcctatgacctgggtcag
cccgtgccttatgagaccacccagcccttacaggttgcgctgttggacattgatgacaac
gagcctgtcttctttaagcccccgcgaggcagcctgccgtaccagactatgtctgtggca
gagcactctactccagggacagtagtgggtaacgtgacaggagctgtagacgcagatgaa
ggctcaaacgctgtagtctacttcttcatagcagggggagatactgaaggtaactttggc
ctgagcccagggggcgtactgaaggtgaagaaggatctggatcgtgaggacatctcagtg
tactccatcatcatcaaggcctccagccacaggaactgggcccctgcacggggtcaaagg
tcagcctggggaagagcacttgaccccagccgtgacccaaccctgcaggaggtcagaatc
tatctggaggacatcaacgaccagccaccacgcttcaccaagctagagtacactacaggt
gtggctgctgatgccaaggtaggctcagatctgattcgggtacaggccatagacaacgat
gtagggaacaacagtctggtgctgtaccatgtcctgtccatccgctacattaaactccag
tccaatgacactgaggacataggaaacagcttcatcataggagagacagatgggatcatc
cgtacctatgacctgttcacggcttacgacccgggctacttcgtggtggaggtgttggca
cgggacctggcgggccacagtgacatcgccatggtgggcatctacatcctgcgggacgac
cagcgggtgaagatcgtcatcaacgagataccagagcgggtacgacagttccaggaggag
tttatcaacctgctgtccaacatcaccggagccatagtcaacacggacgatgtgcagttc
cacgtggacaagaagggcagagtgaactttgcccagacagatgtgctcatacacgtggtc
aacaagcacaccaaccgcatcctggatgtggaaaaggtgattcagatgattgatgagaac
aaggaacagctgaagaaccttttcaggaattacaacatcctggatgtccagcctgccgtc
agcgggagagcacctgatgaccttactacgctacagatggccatcattatcttagctgtg
ttgctcttcttggcagccatgtcattcatcttcatgaactggtactatcgcacagtacac
aagaggaagctgaaagccattgtagcaggatccacagggaagcaaggtctcatggacatc
ctggatttgcccaacaccaataaatactcatttgagggggccaaccctgtgtggctagac
ccgttctgtcggaacctggagctagctgcccaggcagagcatgaagacgacctgccggaa
aacctcagtgagatcactgacctgtggaacagccccgtgcctactcacggaacatttggc
cgcaagcctcaggccaagcctgaggatgaccgttacctgagagcagccatccaggagtat
gacaacatcgccaagctgggccagatcatgagggaggggcccgttaagggcacattgctc
aatgtggttctggacgactacctgaggctcaaaaagctctttgcagccagactggtcacc
aagtcgaccagccaaggcgaccaatcgtcagtcacagagctgatccagagtgacctggat
gatgacgaggatgagcgagtgagcatgggtggcagctggggtacgctgcgcttcaaacac
aagctccctgtggagatgaggggacccgacggcgtgcacgttgttcacggcagcatgggc
acgctcctgacctctgacctcaacagtctgcctgaggacaaccagctggccctggcgcgc
tccatggaggcacttaacgccaccgacagggggctgtacaccgagcacaatgcccgtact
gagtcagccaagtccacgccgctgcaccacaacaacaaggtcgatgacacactgtccgag
agcccgctggagatcaccgagttatga
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