Oncorhynchus tshawytscha (Chinook salmon): 112237840
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Entry
112237840 CDS
T05605
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112237840
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112237840
09142 Cell motility
04820 Cytoskeleton in muscle cells
112237840
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112237840
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112237840
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112237840
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112237840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112237840
NCBI-ProteinID:
XP_042184068
LinkDB
All DBs
Position
LG10:complement(12262812..12376633)
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AA seq
1682 aa
AA seq
DB search
MKKNVKSLRNLAMGLMVVTLCITVQESESAACHGCAAGSRCDCSGVKGVKGERGLPGLQG
QLGVPGFPGPEGPIGGRGEKGSDGPSGTGGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PKGTAGCNGTKGERGFPGSPGFPGLEGRLGPPGFPGQKGDPGDIIRSERFGQIGDPGLPG
LPGVPGEQGPSGMSGPTGPPGPRGYEGRPGPPGLPGPKGNMGLNFQGPKGDKGNSGLQGP
PGPPGQVGEQTRPSVSSIQKGETGDQGLPGPPGDPGYPGPSGSSGGLKGEKGENGEAGKR
GKPGKDGDPGPAGFPGSKGDPGGPGLPGRDGDRGSKGDRGYPGRPGVQVSNGPPTVGPKG
ESGRPGETGRKGDRGQPGLSGPPGQPGTPGIGGGGQPGLPGYPGERGQKGDEGQPGISIP
GNPGRGGAPGLQGRPGPPGPPGISNGGFNCTGGAPGSPGQQGNIGFQGETGQKGEKGETC
VNCFSRGNGVPGARGPPGPPGFPGGPGGPGAKGDRGFPGGPGPSGSSGLPGPQGAPGFPG
EKGDPGETTAVNGVSGDKGDTGFPGPAGLPGLDGRPGRDGGPGAPGAKGSSGSLLVKGER
GPPGEPGLQGLPGDRGATGSPGFGPQGPPGEKGVQGVSGRTGTPGAPGGKGEPGQTVAEK
GLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGSPGPKGDPGLSGIGLPGPPGAKGFPGSPG
LPGGPGGPGRPGVDGFPGQPGAPGAKGEPGFGLSGPQGSPGFPGDKGSPGSKGDSGFPGN
PGLPGRSGFDGGPGAKGDSGIPGRTGDRGPQGSPSIGSQGVPGPVGPPGPIGAPGYSGNN
GEKGDPGLPGPGITGLPGDRGSPGFPGSPGGVGPQGNPGGPGRDGIPGLPGGKGNMGVMG
TPGSVGTPGNPGGPGFPGPKGDDGFPGRPGGTGSPGLKGDRGDPGLVGLPGPSNSPPSIK
GAKGDAGEPGLRGQPGQKGISGLPGDAGIPGQDGRPGLPGPQGPKGDMGIPGGSGSPGSQ
GLKGNMGEMGFPGPTGAKGTPGQLGRSGVPGSSGAPGFPGAKGDPGSPGFGATGATGPKG
EPGRSGFPGQNGVKGTPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGTPGNPG
LAGGPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDQGLSGFGGPGSPGLPGSPGA
KGDFGAPGLPGNPGFPGQKGEMGFPGQPGSPGSIGPPGATGVALQGPKGNSGSPGPPGRG
GPPGPEGPRGLGGSGGTKGEKGIPGSSGSPGFPGAKGELGSPGFPGIPGPSGGSGLKGDI
GLPGVPGFPGLKGESGSPGSSGLPGDPGDPGPAGNQGDPGVAASPIMLKGERGPPGPSGL
PGNRGSQGPPGQEGRSGQPGQPGDPGPEGPPGFSGAFGRKGDSGPAGQPGQRGYPGPTGS
DGQQGPPGNPGSASVTHGFLISRHSQAEYVPTCPEGTSLIYDGFSLLYVQGNERAHGQDL
GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPMPMPMSMAPITGEGIKPFISR
CAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLEE
FRSSPFIECHGRGTCNYYGNTYSFWLATVDQSEMFRKPQSETLKAGNLSTRISRCVVCMK
RT
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaacgtaaagagtctgcgaaatctcgccatggggttgatggttgttaccctc
tgtatcacggtccaggagtcggaatcagcggcatgtcatggatgtgcagcgggatcaagg
tgtgactgcagtggcgtgaaaggagtcaagggtgaaagggggttaccaggactacagggt
cagctgggtgtaccggggttccccggacctgaggggccaatcggtggcaggggagagaag
ggtagtgacggaccttcagggactggaggtccaaaagggataagaggacctcccggactg
cctggattccccggaacaccaggaattccaggtctcccgggacaggatggccccccaggc
cccaaaggaactgcaggctgcaatgggactaagggtgagcgaggattcccaggaagtcca
ggcttccccggactggagggtcgattgggtccacctggttttccaggacaaaagggagac
ccaggtgacatcatcagatctgaacgtttcggacagataggagatccaggtctgcctggc
ctgcctggagttcctggtgaacaaggcccctcgggaatgtccggtcctaccggccctccc
ggccccagaggttatgagggtcgtcccgggcctcctggtcttcctggtccaaagggaaac
atggggttgaacttccaaggtcccaaaggagataagggtaattcaggtctgcagggacct
cccggaccaccaggacaagttggggagcaaacaagaccctcagtgtcgagtattcagaaa
ggagaaacgggtgatcaaggtttacctggtccacctggtgatcctggttatcctggaccc
tctggttcgtctggtggtttgaagggagagaaaggagaaaacggagaagcaggcaaaagg
ggcaaaccggggaaagatggagacccaggtcctgctggattccctggtagtaagggagac
ccaggtgggccaggtctgccaggtcgggatggtgacaggggttccaaaggtgaccgtgga
tatcctggacgcccaggcgtgcaggtgagcaatggcccacctacagttggtcctaaagga
gaatctggacgtcctggggagacgggaaggaaaggagacagaggacagcctggtctttcg
ggtcctccaggtcaaccagggaccccaggtatcggaggtggaggccagcccggtttacca
ggctacccaggagagaggggccagaagggagacgagggccagccaggcatctccatcccc
gggaacccaggacgaggtggcgcccctggtctgcagggacgtccaggacctcctgggccc
ccagggatctccaatgggggttttaactgtacaggaggggcccccgggtcaccaggacaa
caaggcaatataggattccaaggagagaccggacagaaaggtgagaagggagaaacctgt
gttaactgtttctccagaggcaacggtgtccctggagcacgaggccctcccggacctcct
gggttcccaggtggacctgggggaccaggggctaaaggtgacagaggattcccaggcggc
ccagggccctcaggttcttctggtttgcccggtccccagggtgctcctggtttcccagga
gagaagggtgacccaggtgagactaccgctgtgaatggggtgagcggagacaagggagac
acagggtttccaggacccgctggcctgcctggtctggacggaagacctggtcgcgatgga
ggtcctggagctcctggagccaaaggatcatctggatctctattagtgaagggtgagcga
ggacctccaggtgagcccggtttgcagggtctcccaggtgacaggggtgccaccggatcc
ccaggcttcggcccccaggggccccccggagagaagggtgtccaaggtgtctcagggaga
acgggaacacctggagcaccaggaggtaaaggggagccgggtcagacggtagcagagaag
ggcctcccaggaccccgaggacaggatggagaccccggtctacctggaaacccaggtaac
cccggcgggccaggacagcccggtttccccgggtcaccaggtcccaagggtgatcccggc
ctctctggcatcggactgccaggaccccccggagctaaaggattccctggctcacctggt
ttgccaggtggtcccggaggtccaggtagaccaggtgtggacgggttcccaggacagcca
ggtgcacctggagctaagggagagccaggcttcgggctgtcaggtccccagggctcacca
ggcttccccggagataaaggatcacctggatccaaaggagactctggtttccctggcaac
cccggcttgccaggacgatctggctttgacggcggccctggtgccaaaggtgactctggt
atccctggtagaaccggagatcgtggccctcaaggatcaccctccatcggctctcagggt
gtccccggccctgtcggacccccaggacctattggtgctccaggatactcaggcaacaat
ggagagaagggagaccccggtcttcctggcccgggcattacagggttgccaggagacaga
ggaagtcccggtttccccggcagccccgggggagttggacctcagggtaaccccggtggc
cctggccgcgatggaatacctggcctgcctggtggtaaaggaaacatgggtgtaatggga
actcctggatctgtgggaacccctggcaaccccggagggcccggcttccctggacctaaa
ggtgacgatggtttcccagggcgaccaggtgggaccggcagtccaggtctgaagggagac
aggggagaccccggtctcgtaggactccccgggcccagcaactctcccccttcaatcaag
ggagccaaaggagatgcaggagaaccaggtttgcgaggtcagccgggtcagaagggtatt
tccggtctccctggagacgctggtataccaggacaggatggaagacctgggttacctgga
cctcaaggtcccaaaggagacatgggtatccctggaggatcaggctcaccaggaagccaa
ggacttaaaggcaacatgggagagatgggcttcccaggacccacaggagcgaaaggaact
ccaggtcagctaggtcggtcgggcgtgcccggtagttcaggagcacctgggttccccgga
gctaaaggagacccaggttcccccggatttggtgccacaggagctacaggtcccaagggt
gagcctggtcggtcgggattccccggacaaaatggagtgaaaggaactcccggaacacca
gggcttccagggtttcccggtggccccggagccaaaggcgaccccggcctcccaggattc
caaggttctcccggtattcccgggcctaagggtctggacggtacccctggtaaccccggt
ctcgccggaggccctgggcgaccgggagagaatggccgtgccggatcacctgggttccca
ggcgacaagggtcaggcaggtcgcgacggaatccctggaccagcgggagtcaaaggagac
caaggtctttctggtttcggcggcccaggttctcctggtctcccagggtcaccaggtgct
aagggagattttggcgcccctggtcttccaggtaaccctgggttccctggtcagaaggga
gagatgggcttccccggccaacctgggtcccccgggagcatcgggccccctggtgccaca
ggtgtggccctccaggggcccaagggtaacagtggatcccccggcccccctggaagagga
ggtcctcctggcccggagggtcctcgtggccttgggggcagcggagggaccaaaggtgag
aagggaatccctggatcttccggatcccctggtttccccggagcgaagggagaattggga
tcacccggattcccaggtattcctggcccttctggtggcagcgggctgaagggagacatt
ggacttcccggcgttcccggattcccaggactaaagggagaatctggaagcccaggatca
tccggtctccctggagatcctggagatcctggtcctgctggaaaccaaggtgacccaggt
gtcgctgcgagccccatcatgctgaagggagaacgtggcccccctggcccttcaggtctg
ccaggcaaccgtggctcccaaggaccccccggacaggagggacgctcaggtcagcccggt
caaccaggggaccccggtcctgaaggacccccaggattcagtggagccttcggccgcaag
ggagactctggacccgccggacagccaggtcagcgtgggtacccaggtcccactggttca
gatggtcagcagggccccccaggtaaccccggctcagcctctgtgacccatggcttcctg
atctcgagacacagccaggctgaatatgtccctacctgccccgaagggaccagcctcatc
tacgacgggttctctctgctctacgtacagggcaacgagagggcacacggacaggaccta
ggtactgctggtagttgcctgcgtcggttcagcaccatgccattcatgttctgtaacatc
aacaacgtgtgtaacttcgcctcccgtaacgactactcctattggctgtctacacccatg
cccatgcccatgagtatggcccccatcaccggagaaggcatcaaacctttcatcagcagg
tgtgcagtgtgtgaggcccctgccatggtgatcgctgtacacagtcaaaccattcagatc
cccacctgccccagctactgggaaccactgtggatcggatactccttcatgatgcacacc
agtgcaggtgctgagggctctggtcaggctctggcctctcctggctcctgtctagaggag
ttccggagctctcccttcatcgagtgtcacggccgagggacctgcaactactatggcaac
acatacagcttctggctggccactgtcgaccaatcagaaatgttcaggaagccacagtca
gagacgctgaaggcaggtaacctatcgacgcgcattagccgctgtgtggtctgtatgaag
aggacgtaa
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