Oncorhynchus tshawytscha (Chinook salmon): 112238731
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Entry
112238731 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: VWFA and cache domain-containing protein 1-like
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
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Gene cluster
GFIT
Motif
Pfam:
dCache_1
VWA_N
DUF6744
DUF3685
Motif
Other DBs
NCBI-GeneID:
112238731
NCBI-ProteinID:
XP_042177285
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Position
LG01:complement(40043601..40136968)
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AA seq
1293 aa
AA seq
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MARRVGGEGSVILTRIPSTVWNKSSRLHWCNFMAVFWSSVAVLSLLCCGFCGAETEFSIL
EEAQVLAVQMKKLSSQELGVFTMQRIFNSFVYTEKTSNGETEVQQLAKKIREKFNRYLDV
VNRNKQVVEASYTAHLTXPLTAIQDCCTIPPSMMEFDGNFNTNVSKTICCDRLSPTVNSR
AFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKFHCKGNYEHRCRPVYVSAV
RPQSKHIVVIIDHGVTITDTQLQIARDAALVVLSSVDEHDKVSILSSAEAVRSCSLDPCY
KSYLSPATSETKRKMSTFVNNLKASDSPTLHALGFQKAFQLLRNTSNITRQLTNTDMVII
YLSSGITSRDASEHEKRDTLRVVKEENRHLNNSVMILTYALMNEGVTGLKELAFLRDLAE
QNSLKYGVPDRSPLPVVKGSMMVLNQLSNLETTVGRFYINLPNRMIDLARFSLSYQDTMG
DGFIMTASRPCYFGNLLLGVVGVDVNLAYILEDVTYHQDSLASYTFLIDNKGYTLMHPSL
TRPYLMTEPPLHTDIIHYENIPGFPVVRDNILRLPLGSQVIAVPTNSSLSWHTNRLRDPS
REAYNVSYAWKLVQDTSFILCIVYVQPEIPVKHLKNLNTAPSSKLLYHRLDLLGQPSSCL
HFKQLATVESPTVMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKSSVR
NEVMATSHVTDEWMTLMEMSSLNCYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYQH
AVANPGLITFTGPYLDVGGAGYVVTISHTIHASSSQMAPGYAVAVMGIDFTLRYLYKVLL
DLLPICNQDKGNKIRCFIMEDRGYLVAHPTLIDPKGHAPAEQQHITHKEPLVANDILNHP
NFVKKNLCNSFSDRTVQRFYKFNSSIIGDLTNLVHGSHCSKYRLTRIPGTNAFAGIVNET
CDSLAFCACSTVDRLCLNCHRMEQNECECPCECPLEVNECTGNLSYAENRNPSCEVHQEP
LSLTVMDSSLQDTLPQCINTRCSQRFTSSDCFGVLDCEWCMVDSDGKTHLDKPYCALQKE
CFGGIVGAKSPYMDGMGMLDEEVVSLNMMKSAPVGPVAGGIMGCIMVLVLAVYAYRHQIH
RRSHQHMSPLAAQEMSVRMSNLDNERDERDEDSHEDRGIISNTRFIAAVIERHTHSPERR
RRYWGRSGTESDHGYSTMSPQEDSENPPCNNDPLSAGVDVGNHDDDLDLDTPPQTAALLS
HKFHPYRHPPYHHPLHTHRLQAAVTVHSVDAEC
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggcgagtagggggagaaggatccgtgattttaacacgaattccatccacggtt
tggaataagagctcgagactccactggtgtaacttcatggctgttttttggagctctgtg
gcagtattgtcgcttctatgttgtggattttgtggcgctgaaacggagttttcgatcttg
gaggaggcacaagttttagccgtacaaatgaaaaaactgtcctcgcaggagcttggagtc
ttcaccatgcagagaatcttcaactcgtttgtgtacacagagaagacctcaaacggagag
acggaagtacagcagcttgcgaagaagatccgcgagaagtttaaccgttacctggacgtg
gtgaacaggaacaagcaggtggtggaggcatcctacacggcccacctgaccntccccctc
accgccatccaggactgctgcaccatcccgccctccatgatggagttcgacggtaacttc
aacaccaacgtgtccaagaccatctgctgtgaccggctgtcccccaccgtcaacagtcga
gcctttaaccctggacgggacctcaactcagtgttggcagataacctgaagtccaacccg
ggcatcaaatggcagtacttcagctcagaggagggcatcttcactgtgttccccgcccac
aagttccactgcaagggcaactacgagcaccgctgcaggccagtgtacgtgtcggcggtg
cggccccaatcgaaacacatcgtggtgatcatcgatcacggcgtgaccattacagacaca
cagctgcagatcgccagagacgctgcgctcgtcgtcctcagctccgtagatgaacatgac
aaggtctcgatcctgtcctcagcggaggcggtgcggtcctgttcactggacccgtgctat
aagagctacctgtctcctgccaccagcgagaccaagaggaagatgagcaccttcgtcaac
aacctcaaggcttccgacagtcctaccctgcacgcactgggcttccaaaaggccttccag
ctgctccggaacaccagcaatatcacccgccaactcaccaatacggacatggtgatcatc
tacctgtcgtctggcatcacgtcccgagacgcgtcggagcatgagaagagggacaccctg
cgcgtggtcaaagaggagaaccgtcacctcaacaactcagtcatgatcctcacctacgcc
ctcatgaacgagggcgtgaccggtctgaaggagctggcgttcctgcgtgacctggcggag
cagaactcgctgaagtacggcgtgcccgaccgctcgccgctgccggtggtgaaggggagc
atgatggtcctgaaccagctcagtaatctggagaccaccgtgggacgcttctacatcaac
ctgcccaaccgcatgattgacctggcccgcttcagcctgtcctaccaggacaccatggga
gacggtttcatcatgacggcgagccggccatgttactttggcaacctgttgctaggcgtg
gtgggagtagacgtgaacctggcctacattctagaggacgtcacctaccaccaggactcc
ttggcctcctacaccttcctcatagacaacaaaggttacaccctgatgcacccgtccctc
acacggccctacctgatgaccgagcctccgctgcacactgacatcatccactatgaaaac
atcccagggttccccgtagtacgggacaacatactccgtctgcccctgggcagtcaggtg
atagctgtgcccaccaactcctctctgtcctggcacaccaaccggctacgagaccccagc
agggaggcctacaacgtcagctacgcatggaaactggtccaggacacatcgttcatcctg
tgcatagtgtacgtccagccagagatcccagtgaaacacctgaagaacctgaacactgct
cccagctccaagctgctctatcaccgcctggacctgctgggacaaccctcctcctgtctg
cacttcaaacagctggccaccgtcgagagccctacggtgatgctgtctgcagggagtttc
tcctctccctacgagcacctcagtcagccagagaccaaacgcatggtggaacactacaca
gcctacctcagtgacaacacacgcctcatagccaaccctggccttaagtcgtcggtcagg
aacgaggtgatggcgaccagtcacgtcacagatgaatggatgacactcatggagatgagt
agcctcaactgctacattgtgcgccgttacatagcaacgcccaatggggtgctgcggatt
taccccggctcgctaatggacaaagctttcgacccaacccggagacaatggtaccagcac
gctgtagccaacccaggcctcatcaccttcactgggccttacctggatgtgggcggggct
ggctacgtggtcaccatcagccacaccatccacgcctcaagttctcagatggccccaggg
tatgcggtagccgtgatgggcatagacttcaccctgcgttacttgtacaaggttctgctg
gacctgctacccatctgcaaccaggacaagggtaacaagatccggtgtttcatcatggag
gacaggggttacctggtggcccaccccaccctcatcgaccctaaaggccacgcccccgcc
gaacagcagcacatcacccacaaggaaccgctggtggccaacgacatcttgaaccacccc
aactttgtcaagaagaacctctgcaacagcttcagtgaccgcacggtccagcgcttctac
aagttcaacagcagtatcattggcgacctgacgaacctggtccacgggagccactgctcc
aagtaccgtctgacccgtatcccagggaccaacgctttcgcgggcatcgtcaatgagacg
tgcgactcgctggctttctgtgcctgcagcacggtggaccgcctctgtctcaactgtcac
aggatggagcagaatgagtgtgagtgtccatgtgagtgccccctggaggtcaatgaatgt
actggcaaccttagctacgctgaaaacaggaaccccagctgcgaggtgcaccaggagccc
ctgtctctgacggtgatggactccagtctgcaggacaccctgccccagtgtatcaacacc
cgctgcagccaacgcttcaccagcagtgactgttttggcgtgctggactgtgagtggtgc
atggtggacagtgatgggaagacccacctggacaaaccttactgtgccctgcagaaagag
tgcttcgggggcatcgtgggggccaagagcccttacatggacggcatggggatgctggat
gaagaggtagtgtctctgaacatgatgaagagtgccccggttgggccggttgccgggggt
attatgggctgcatcatggtgctggtgttggctgtctacgcctacagacaccagatccac
cgacgctcacatcaacacatgtcccctctggctgcacaggagatgtccgtcaggatgtct
aacctggataacgagagagacgagagagacgaggacagccacgaagacagggggatcatc
agcaacacccggttcatcgcggcggtgatcgagagacacacccacagccctgaacgccgg
aggaggtactggggacggtcagggacggagagtgaccacggctacagcaccatgagtcct
caggaggacagcgagaaccctccctgcaacaacgaccccctgtcggccggcgtggacgtg
ggtaaccacgacgatgacctggacctggacacgccccctcagacggcggcgctgctcagc
cacaagttccacccgtaccgccacccgccttaccaccacccgctccacacgcaccgcctg
caggcggccgtcaccgtgcacagtgtggacgcagagtgctga
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