Oncorhynchus tshawytscha (Chinook salmon): 112257974
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Entry
112257974 CDS
T05605
Symbol
ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10 isoform X1
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112257974 (ddx10)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112257974 (ddx10)
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
90S particles
Helicases
112257974 (ddx10)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
PAS_11
Motif
Other DBs
NCBI-GeneID:
112257974
NCBI-ProteinID:
XP_024287719
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All DBs
Position
LG09:complement(40040737..40111607)
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AA seq
861 aa
AA seq
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MEKGKRPNVSPNKKIRKKNPTDTIDPVKNFERWKKKYNRTKTRVKREKRQKRRPEWQVEK
EAIQRLVNKYNEINAKDAERFSDFPISKNTLRGLMEAQYRQPTEIQRQTIGFALQGKDVL
GAAKTGSGKTLAFIIPVLECLYRQQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEF
SAGLIIGGKDLKNESEKIHRTNIIICTPGRLLQHMDETAAFHASDLHMLVLDEADRILDM
GFADTINAIVENLPKTRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQ
NYVVCELHQKVNMLFSFIRSHLQKKIIVFFACCKEVQYLFRVFCRLRPGMPILALHGKQQ
QMKRVEVYNDFIKKKNAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYK
EGGEALLVLLPSEEKDMLSQLQEKKVPINRIQVNPEKLTSVQQKLEAFLAQEKEQKERAQ
RCFVSYLRSVYLMKNKDVFDVFQLKLQEYAASLGLAVAPRVRFLNKVQKQIADPGQSGGP
GDVAPHEEEKELKSFKAQLRGDGLKSEAQESQSSDEEDDEEEDEEKLQPGPTGLIFGADE
TEEDEDMRDLDLLTVKRKDVFSLEEVDQDDEETDSNTIKKTEKETKFKEAKKVLKRNFQV
NTKLVFTEDGQMVQQWPPLQRTAVPATEGEEDDCTSGINVEEARERLRREDQEFDKLEYR
RKVKEKHREKRLKENAARREASKQYAEEQKSGEEDEEEVVAYLGGSDGEEFDPSTLPDPD
KLHYDSEEADDQISPAAGTRKRIRSDRIDDSGEEEEEEEEEAAAAGSRKRPRQQATAKPL
DTGLSLAEDEALVLHLLGNRS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggcaaacgaccaaacgtgtcccccaataaaaaaataagaaagaaaaaccca
accgacactattgatccggtgaagaacttcgagcgatggaagaagaaatacaacaggacg
aaaacacgagttaaacgagagaaaagacagaaaaggagacctgaatggcaggtggagaaa
gaagctattcaaaggcttgtcaacaaatataacgagataaatgccaaggatgctgagagg
ttttcagatttccccatctcaaagaataccctgcgaggtctgatggaagcacagtatcgt
cagcccacagaaatacagagacagaccattggctttgcgttgcaaggtaaagatgttctg
ggtgctgcaaagacgggctctggaaaaacactggcctttatcattcctgtattggagtgt
ttgtatcgtcagcagtggacagccatggatggcctgggggccctcataatctccccgaca
cgagagctggcctatcagaccttcgaagtactccgtaaagtgggcaagaaccacgagttc
tctgccggcctcatcattggcggaaaggacctgaaaaatgagtctgagaagatccaccgc
accaacatcatcatctgcacaccaggacgcctgctccagcacatggacgagactgccgcg
ttccacgcctccgatctgcacatgctagttttggatgaggcggatcgtatcctggacatg
ggttttgccgacactatcaatgccatagtggagaacctccccaagacccgtcagacactg
ctgttctcagccacacagaccaagtcagtcaaagacctggcccgcctcagcctcaaagac
ccagagtacgtctgggtgcacgagaaggccaagttcagcacgccggccacgctggagcag
aactacgtggtgtgtgagctgcaccagaaagtcaacatgctcttctccttcatcaggagc
cacctgcagaagaaaatcattgtcttcttcgcctgttgcaaagaggtgcaatacctgttc
cgggtgttctgtcggctgcgtccaggcatgcccatcctggccctgcatgggaagcaacag
cagatgaagagggtggaggtctacaatgacttcatcaagaagaagaatgctgtgctcttc
gccacagacattgcagccagaggcctagacttccctgccgtgaactgggtgttgcagttt
gactgtccagaggatgccaacacgtacatccacagagtgggacgaaccgccaggtataag
gagggaggagaggctctgcttgttctgctgccctcagaagagaaggacatgctatctcag
ctccaggagaagaaagtccccatcaacagaattcaggtgaacccagagaagctgacgagc
gtgcagcagaagctggaggctttcctggcccaggagaaggaacagaaggagcgagcacag
aggtgtttcgtctcctacctgcgctccgtctacctcatgaaaaacaaagacgtctttgat
gtgttccagctcaagctccaggagtatgcagcttctctgggcctcgctgttgctccaagg
gtgcgttttctcaacaaagtccagaagcagatagcagaccctggacagagcggcgggccg
ggagatgtggccccgcatgaggaggagaaggaactaaagagcttcaaggctcagctcaga
ggagatgggctcaagtccgaagctcaagaatcccaaagttcagatgaggaagatgatgag
gaggaggacgaggaaaagttacagcccggtcctacgggtctcatcttcggggcagatgaa
accgaggaggatgaagatatgagggacttggacctgctcacagtgaagagaaaagatgtc
ttcagtctggaggaagttgaccaggatgatgaggaaactgacagtaacaccattaagaaa
acagaaaaagagaccaagttcaaagaggccaagaaagtcctgaagagaaacttccaagtc
aacaccaaattagttttcactgaagacggacagatggtgcagcagtggcccccgctccag
aggacggccgtgccagccacagagggggaggaggatgactgcacgtcgggcatcaatgtg
gaggaggccagagagaggctgcgccgagaggaccaggagtttgacaagctggagtacagg
cgtaaagtcaaagagaaacacagggagaagagactgaaggagaacgctgccagaagagaa
gccagcaagcagtacgctgaggagcagaagtccggtgaggaggatgaagaggaggtggta
gcgtacctgggcggttctgatggagaagagtttgaccccagcacactgcccgacccggac
aaactacactacgactcagaggaagctgatgaccagatcagccctgctgctgggacgagg
aagcgcatccgcagtgaccgcatcgatgactcgggtgaagaagaagaggaggaggaggag
gaggcggcagcagcggggagcaggaagagacccaggcaacaagcaaccgccaagcccctg
gacactggcctctctctggccgaggacgaagcactggtcctgcatctgctggggaaccgg
agctag
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