KEGG   Pyrococcus abyssi: PAB1057
Entry
PAB1057           CDS       T00024                                 
Symbol
nrd
Name
(GenBank) nrd inteins containing ribonucleotide reductase
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
pab  Pyrococcus abyssi
Pathway
pab00230  Purine metabolism
pab00240  Pyrimidine metabolism
pab01100  Metabolic pathways
pab01232  Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:pab00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    PAB1057 (nrd)
   00240 Pyrimidine metabolism
    PAB1057 (nrd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pab03400]
    PAB1057 (nrd)
Enzymes [BR:pab01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     PAB1057 (nrd)
DNA repair and recombination proteins [BR:pab03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    PAB1057 (nrd)
SSDB
Motif
Pfam: Ribonuc_red_lgC Intein_splicing LAGLIDADG_3 Stirrup ATP-cone Ribonuc_red_lgN Hom_end Endonuc_subdom LAGLIDADG_WhiA Hint_2 PT-HINT
Other DBs
NCBI-ProteinID: CAB50512
UniProt: Q9UYA0
LinkDB
Position
1570457..1576825
AA seq 2122 aa
MPVEKVMKRDGRIVPFDESRIRWAVQRAMWEVGVRDERKLDEVVKNIVKRINELYDGKIP
HIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKRILNKKELDEIDKRFSINAL
RVLASRYLKRDENGNIIESPRELFERVSILAVIPDLLYDERVFDKDGNYKQDLKRVEYYL
ENFEKFDGKYSIGKYKLNKYHFERMVNLYRELAEKGKMKVSIDEFLSMLERGEFDKYEKE
IEEYFKLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKMGG
GCIDGNAKIIFENEGEEHLTTMAEMYERYRHLGEFYDENYNRWGIDVSSVPIYVKSFDPE
TRRVVKGRVRAIWKYELGEEIPKYEIRTHKGTKILTSPWHPFFVLTPDFEVIEKRADELK
VGDILIGGMPDGEDHELIFDYWLAGFIAGNGNLDDSEREYKARELLDGIENGIPPKILRK
GKNAVLSFITGLFDAEGHVNDKSGIELGMVNKKLIEAVTHYLNSLGIKARMREKRRKNGI
DYIMHVEEYSSLLRFYELIGKHLQNNEKKEKLEILLHKHNGGAFDLSLNFNAFKEWASRY
GVEFKTNGNQILAIIGNEKVSLGQWHARGHVSKAVLVKMLRKLYEVTKNDEVKEMLHLIE
SLEVVKEITITNEPKTFYDLTVDKYQNYLAGENGMIFVHNTGLNFSKLRPEGDIVGTTTG
AACFTGDTRILTEKGLIPIEEIVHETGKKPKVVTHAGLKDIIETYDNGEMEVFRVTTEDG
YELKVTGDHKFLVFDENGNPTLKPLKELKVGDYVYILAPEWKGGEYVELDTNIELKGKGY
NVNLPSKLDEKLAYLLGIIYADGHIRHYFENGKRKNSKIEIYLHQDETEIKEKVKRYFKE
IFGIEPKEFLKEEQHKVILVIPSTKIVKFLEINGLLKDKSENIRVPEAIFRSRPSVIAAF
LAGFFDGDGSIDQNYRIAFKSISREFIKEAQLLFLALGIVTSIQEYNPPNPNNKTVYTLR
VQTRDMKIKAFNVLKESVKLSKIMKEAISKLEENGKNKKFSFPFNAIYHIKDPKIRAKIQ
RDYKILSYNSKVTHRAFINNILKLKEELGLDDEEVKYFEMLSKLYPTKITKIEPLGKAHV
YDLQVEDVHLLTGNGIYTSNSGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEK
FIHAKEKNIGTNVLSNFNISVGIWEDFWEALKEGKKYPLINPRTGEVVKEIDPKTLFEEL
AYMAWAKADPGVIFFDIINRRNVLKEAKGGPIRATNPCVVGETRILTPEGYIKAEELFKL
AKERGKMEAIAVEGIAEGGEPYAYSLEILLPGDKQVKYETVHGNAVEVADPVSVPAYVWK
VGMKEVARVRTKEGYEITATLDHKLMTPEGWKEIKDLKPGDKILLPRFEVEEDFGSESIG
EDLAFVLGWFIGDGYLNVKDKRAWFYFNAEKEEEIAWKIREILAKRFEIKAEPHRYGNQI
KLGVRGKAYEWLESIVKTNEKRIPEIVYRLKPNEIASFLRGLFSADGYVDNDMAIRLTSK
SRELLREVQDLLLLFGILSKIYERPYKREFKYTTKDGEERTYTTEGYYELVIANYSRKIF
AERIGLEGYKMEKLSLEKIKVDEPIVTVESVEILGKKLVYDFTVPEHHMYISNGFMSHNC
GEEPLYEYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNSIDVNKFPLP
EIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSIEAAKK
RGTFPLYEKTGYPKGELPVEGFYHPEIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSM
IADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKRRGLYSEELLKKISDNYGSVQGL
EEIPEDMRRVFVTALDIHWLDHLLAQANIQMWLTDSASKTINMINEATVEDVKAAYLIAH
FLGCKGVTVYRDGSLSVQVYSVEGEKKRRYKPKPSEYAKKVLLEIVEKEPWIKNFINVDE
ILNGKRQELNFSLTGLKRETHEVKKVEVKQQNNKIPEEKIKELLGVVYCPVCYEREGKLV
ELRMESGCATCPVCGWSKCVIS
NT seq 6369 nt   +upstreamnt  +downstreamnt
atgccagttgaaaaagtgatgaaacgcgatggaaggatagtacccttcgatgagtcacgt
ataaggtgggctgtacaaagggcaatgtgggaagtaggagttagagacgagaggaagctg
gatgaggtagttaagaatattgtcaagaggattaatgaactttacgatggaaagattcct
cacatagagaacatacaagatatagtcgagctcgaattgatgagagcaggcctattcgag
gttgcaaaggcttacattctctacagaaagaagaaggctgaaataagggaggagaagaag
aggatacttaacaagaaagagctagatgagatagataagaggttctcgataaacgctctc
agggttttagcctctaggtacctaaagagggacgaaaacggaaacattattgagagcccc
agggagctcttcgagagagtctcgattctagcggtaatcccagatttactttacgatgag
agggtattcgacaaggatggaaactacaagcaggatttaaagagggttgaatactacctg
gaaaactttgaaaagttcgacggaaagtattcaataggtaaatacaagctcaacaagtac
cacttcgagaggatggtcaatctatacagggaactcgccgagaagggtaagatgaaggtt
tcgatagatgagttcctcagcatgcttgagaggggagagttcgacaagtacgagaaggaa
attgaggaatatttcaagctaatgactaatcaagttttcatgcccaacactccagcgctc
ataaactcaggtagaccacttggaatgctctctgcttgcttcgttgttccgatagaagat
gatatggagagcataatgaaagcggcacacgatgttgccatgatacagaagatgggcggt
ggatgtatagacggaaacgcaaagataatcttcgagaacgagggagaagagcacttaaca
acaatggctgagatgtatgagaggtacagacacttaggcgaattttatgatgagaattac
aacaggtggggtatagacgtttcaagcgttcctatatatgtgaaatcgttcgatccagag
acgaggagagtcgtcaaggggagggtcagggcaatctggaagtatgaacttggagaggaa
attcctaagtatgaaatcagaacccacaaaggaaccaaaatattaacatctccttggcat
ccgttcttcgttctgactcctgacttcgaagtaatagaaaagagagctgacgaactaaag
gtaggagacattttgataggtggaatgcctgatggagaagatcatgaattaatattcgac
tactggcttgccggattcatagcagggaatggaaatctcgatgacagtgagagagagtat
aaagccagggaactcttagatgggatagaaaatggaattcctcccaaaatactgagaaaa
ggtaaaaatgcagttttatctttcataactggcttgtttgatgcagagggtcatgtaaac
gataagtcaggtatcgagctcggaatggtgaacaaaaagctaatagaggctgttactcac
tacttgaactccctcggaataaaggcaagaatgagagagaagaggagaaaaaatggaatt
gactatataatgcatgtcgaagagtactcatcgcttctaaggttctatgagcttatagga
aaacacctccagaataatgaaaagaaagaaaagcttgagattctcctgcacaaacacaat
ggaggggcatttgatctctcactaaacttcaacgccttcaaggagtgggcatccagatac
ggcgttgaatttaagactaacggtaaccagatcctcgccattatagggaatgaaaaggta
tcccttggtcagtggcatgcgagagggcatgtctctaaggcagtccttgtgaagatgctt
agaaagctctacgaggttacgaaaaacgatgaagtaaaagaaatgctccatctcattgaa
agtcttgaagtcgttaaagagataacaataacgaatgaacccaagacgttctatgatctc
acggtagataaatatcagaattatctagccggagagaacggaatgatcttcgtccacaat
actggccttaatttctcaaaacttcgtccagaaggagacattgttggaacaactacgggg
gcagcctgttttactggggacacgaggatcctaacagaaaaaggtctaatcccaattgag
gaaatagtacacgaaactgggaaaaaaccaaaggtagtgactcatgctggattaaaggat
atcattgagacctatgataatggtgaaatggaagtattcagagttacaaccgaagatggt
tacgaactcaaggttactggtgaccataaattcctagtcttcgacgagaatggaaatccg
acacttaagcctctcaaggaattaaaagttggagactatgtctacattctagcccctgag
tggaagggtggagaatacgtagaattagatacaaatatagagctcaaaggaaagggatac
aatgtcaacttaccaagcaaactcgatgagaagctcgcttatctcttaggaattatctat
gccgatggccacattaggcattacttcgaaaatggaaagagaaagaattcaaaaatagag
atatacctccaccaagatgaaaccgaaataaaagagaaggttaagagatacttcaaggag
atttttggcattgaacctaaggagttcttaaaggaggagcagcataaggtgatccttgta
attccttcaacgaaaatagtgaagttcttagaaattaatgggctcctaaaggacaaatct
gaaaatataagggtgccggaagctatattcagaagcaggccttcagtaattgctgcattt
ttagcaggattctttgacggggatggatcaatagaccaaaactataggatagccttcaaa
tccatttcaagggagttcataaaagaagctcagctcctattcctagcactaggcatagta
acaagtatacaggagtacaatccaccgaatccaaataacaaaactgtttacaccctgaga
gtccaaacaagggacatgaaaattaaagcatttaacgtcttaaaggaatcagttaaactt
tcaaagattatgaaagaagccatcagtaaacttgaagagaatggaaagaataagaagttc
tcgttcccatttaatgcaatttaccacataaaagatcccaagatcagagcaaagatacag
agggactacaagattctctcttataactcaaaggtcactcacagggcatttataaacaac
atactaaaattgaaggaggaattagggcttgacgatgaggaagttaagtactttgaaatg
ctatcaaagctctatccaactaagatcacaaagattgaacctctaggaaaagcccacgtc
tatgatcttcaagttgaagacgttcacctccttaccgggaacggaatttacacatccaat
agtggtcccgtttcgttcatgcacctcatagatgccgttagtgacgtaataaagcaagga
ggagtcagaagaggagcaaatatgggaattttagagatttggcatccagacattgagaag
ttcattcacgctaaagaaaagaacatagggacaaatgtcctctcgaacttcaacattagc
gttggaatatgggaagacttctgggaggcgttaaaagaaggaaagaaatatccactaatc
aacccaaggaccggagaagttgttaaggaaatcgatccaaagacactctttgaggagcta
gcctacatggcatgggccaaggccgatcctggagttatattctttgacataataaacagg
aggaacgtcttgaaagaagcaaagggagggccaataagggctactaacccctgtgtcgta
ggggaaacaagaattctaacacccgagggatacataaaggcggaagagttattcaaatta
gcaaaggaaaggggtaaaatggaagccatagcggtcgaaggtatagcagaggggggagaa
ccctacgcatattcccttgagattctcctaccaggagataagcaggttaaatacgaaacc
gttcacggaaatgccgttgaagtcgcagacccagtttcagttccagcttacgtctggaag
gtcgggatgaaggaagtagcccgcgtgagaacaaaggaaggctacgaaataacggcaacg
ctagatcacaaactaatgacgcccgaaggatggaaggagatcaaggatttaaagccaggt
gacaagatactcttgcctagatttgaggttgaagaggacttcggaagcgaaagcattgga
gaggatttggcattcgttctcgggtggttcatcggagatggttatctcaatgtgaaagat
aaacgagcatggttctactttaacgcagaaaaagaagaagagattgcatggaaaataagg
gagatattagcgaaacgctttgaaatcaaggccgagcctcaccgctacggcaaccagatt
aagctcggtgtccgcggaaaggcttacgaatggcttgaaagcatcgtcaagacgaatgag
aagcgcattcccgagattgtgtacagactgaagcccaacgagattgcctcgttcctacgt
ggtctctttagtgctgacggttacgtcgataatgacatggcaataaggcttacctcaaag
agtagggagctccttagggaagttcaggacttacttctactatttggaatattgtcgaag
atatatgagagaccatacaagagggaatttaagtacactactaaggatggagaggaaaga
acgtatacaactgagggttattacgagctagttatagcaaactatagcaggaagatcttc
gcggagaggattggtcttgaaggttacaagatggagaagcttagtctcgagaagatcaag
gttgatgaacctattgttacagttgaaagcgttgaaatccttgggaagaaactcgtctat
gactttacagttcctgagcatcacatgtacataagcaacggcttcatgagccataactgt
ggagaggagcccctctatgaatacgaatcctgtaaccttgcaagcataaatctagcaaag
ttcgtgaagtacgacgaaaacgggaagccatacttcgactgggacgagtacgcttacgtt
atccagaaggtcgcaaagtatctggacaattcgattgacgtgaacaagttcccgttacct
gagatagactacaacacgaagctcaccaggaggataggcgttggaatgatgggcttagcg
gatgcgctctttaagcttggaataccctacaacagcgaggaaggcttcaagttcatgagg
aaggttactgagtatctaaccttctacgcctacaagtactcgatagaggctgcaaagaag
aggggaaccttcccactctacgaaaagactggatatccaaaaggagagctgccggtagag
ggattctatcacccggagatatggaacctgccatgggataaattggttgaggagataaag
aagtatggagttaggaatgccatggtaacgacctgcccaccaacaggctctgtctcaatg
attgcagacacgtcaagtggaattgaaccgatatttgcattggtttacaagaagagcgtt
accgtcggagagttctactatgtagatccagtgtttgaggcagagcttaagaggagaggg
ctctacagtgaggagttgcttaagaagataagcgacaactatggaagcgttcaagggcta
gaagagattccagaggatatgaggagggttttcgtgaccgctttagatattcactggcta
gaccacctgctagcacaggccaacattcagatgtggctcaccgattcagctagcaagacg
ataaacatgattaacgaggcgacggttgaagacgttaaggccgcttacctaatagcccac
ttcctgggctgtaagggagtaaccgtttacagggacggctcgctgagcgttcaggtttac
agcgtcgaaggagaaaagaagaggagatacaagccgaagccgagtgaatacgcaaagaaa
gttctactggagatagtcgagaaggagccctggataaagaatttcataaacgtcgatgag
atactaaacggaaaacgccaagagctcaacttctcattaaccggcctaaagcgtgagact
catgaggttaagaaggttgaagttaagcagcaaaacaataagattccggaggagaagata
aaagagctcctgggagtggtttactgtccagtatgctatgagagggaggggaagctagtg
gaacttagaatggaaagcggttgtgcaacttgtccagtgtgcggatggagcaagtgcgtg
atcagctga

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