Pyrococcus abyssi: PAB2086
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Entry
PAB2086 CDS
T00024
Name
(GenBank) Cdc48 cell division control protein 48, AAA family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pab
Pyrococcus abyssi
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pab03019
]
PAB2086
03009 Ribosome biogenesis [BR:
pab03009
]
PAB2086
04131 Membrane trafficking [BR:
pab04131
]
PAB2086
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pab04147
]
PAB2086
Messenger RNA biogenesis [BR:
pab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PAB2086
Ribosome biogenesis [BR:
pab03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PAB2086
Membrane trafficking [BR:
pab04131
]
SNARE
SNARE associated proteins
Others
PAB2086
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PAB2086
Exosome [BR:
pab04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PAB2086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
CDC48_2
AAA_16
RuvB_N
AAA_2
AAA_5
AAA_22
AAA_14
TIP49
AAA_33
nSTAND3
Vps4_C
AAA_28
RNA_helicase
AAA_18
IstB_IS21
AAA_24
Mg_chelatase
Sigma54_activat
DUF815
Bac_DnaA
Parvo_NS1
AAA_7
ATPase_2
AAA_17
Zeta_toxin
ABC_tran
AAA_25
TsaE
PhoH
NB-ARC
SLFN-g3_helicase
AAA_3
AAA_19
ATPase
Zot
DUF5446
ARMT1-like_dom
AAA_10
PriX
Motif
Other DBs
NCBI-ProteinID:
CAB49317
UniProt:
Q9V1N2
LinkDB
All DBs
Position
complement(383609..385996)
Genome browser
AA seq
795 aa
AA seq
DB search
MAEKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPE
DEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERL
VGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVT
YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA
NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK
RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ
IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL
YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV
LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE
AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE
IFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATN
RPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG
ADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM
EYYRKIQEQFKQARG
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaagaaggaggtcaaacttaaggtagcttccgcttatcaaagggacgttggt
aggggaattgtcaggttagatagaaaaactatgagagagctaggaatctccccaggagat
gtcgttgagataatcggaacaaagaacacggcagcgatagcctggccagcctatccagag
gatgaagggctaggaataataagaatggacggaactatcagaaagaatgcaggagtaggg
cttggagacgaggttactgttaggaaggcagaagtcagggaagctaagaaggtcacgcta
gccccaacagagcccataaggttcggaagggacttcgttgaatggctccacgagaggcta
gttggaaggccagtagttagaggagactacattaaggtcggagttcttgggcaagagcta
accttcgttgtcacggcaacccagccgagtggtgttgtccagataacggaattcactgac
ttcaacatcagcgagaagccagtgaaggaagtagagaagagaatgacaacgggagtaact
tacgaggacatcggcggactcaaggatgtcatcgagaagataagggagatgatagagtta
ccgttgaagcaccctgaactgttcgagaaactcggtatagagcctcctaagggtgttctt
ctctatggtccaccaggaactggtaagaccttgctagccaaggcggtagctaacgaggct
aacgcttacttcatcgcaataaacgggccggagataatgagcaagtactacggagagagc
gaagaaaggttgagagaggtcttcaaggaagctgaagagaacgctccagcgataatattc
atagacgagatagatgcgatagcaccgaagaggagcgaagttactggggaagttgagaag
agggtagtggctcagctgttagcattaatggacggtctcaagagcaggggtaaggtcatc
gtcataggcgcaaccaacaggccagatgccatagacccagctctaagaaggcctggaagg
ttcgatagggaaattgaggtaggagtcccagacaggcaaggtaggaaggagatactccag
atacacactaggggaatgccaatagagccagacttcaggaaggatgatgtgcttaagata
ctcgaagacttcaagagggagggcaagttcactaagataatagataaggctattgaggaa
gtcaacaagagcaaggaggaggaaattccacaggttctcaagaagatagacgcagagtta
tacgatgaggttaagacgaggctaatagacaagttgctcgatgagttagccgatgtaacc
catggattcgttggtgcagacttggctgcactagcaagagaggcagcgatggcggcactg
aggagactaataagggaaggaaagatcgacttcgaagcagagacaattccaagagaagtc
ctagatgagcttaaggttaccaggagagacttttatgaggctttgaagatggttgagcct
tctgctctcagggaagtgctcattgaagttccaaacgttcactgggacgacattggagga
ttagaagatgtgaagcaagaactaagagaagcagtagaatggccactaaagtacccagag
gcgtttaaagcctatggaataactcctccaaagggtatcctgctctacggcccaccggga
actggtaagaccttgctagctaaggcagttgccactgaaagccaggcaaacttcatagct
gtcagggggcccgagatcttaagtaaatgggtcggtgagagcgagaagaacataagggag
atattcaggaaggctagacaagcggcgccgacggtgatattcatagacgagatagatgca
atagctccaagaaggggaaccgacgttaacagggtaaccgataggataatcaatcagtta
ctaacagagatggatggaatccaggagaatgcaggggtggtcgtcatagcagctactaat
aggcctgatattttggatcctgcgttgttgaggcctgggcgttttgataggcttatccta
gtgcctgctcctgatgagaaggctaggtttgagatattcaaggttcacacgaggggaatg
ccactggcagatgacgttgacttgaaagaactagcaagaagaacagaaggctacacagga
gcagacatagcagcagtctgcagagaagcagccatgatagccatgagaagggcgctagag
aaggggataataaagccaggcatgaaggccagcgagataaggagattagccaaggtcacg
atgaaggacttcgaggaggccctgaggaagataggaccatccgtaagcaaggagacgatg
gagtactacagaaagatacaggagcagttcaagcaggctaggggatga
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