KEGG   Pelagibaca abyssi: Ga0080574_TMP3579Help
Entry
Ga0080574_TMP3579 CDS       T04681                                 

Definition
(GenBank) DNA ligase-1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
paby  Pelagibaca abyssi
Pathway
paby03030  DNA replication
paby03410  Base excision repair
paby03420  Nucleotide excision repair
paby03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:paby00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Ga0080574_TMP3579
   03410 Base excision repair
    Ga0080574_TMP3579
   03420 Nucleotide excision repair
    Ga0080574_TMP3579
   03430 Mismatch repair
    Ga0080574_TMP3579
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:paby03032]
    Ga0080574_TMP3579
   03400 DNA repair and recombination proteins [BR:paby03400]
    Ga0080574_TMP3579
Enzymes [BR:paby01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Ga0080574_TMP3579
    6.5.1.6  DNA ligase (ATP or NAD+)
     Ga0080574_TMP3579
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Ga0080574_TMP3579
DNA replication proteins [BR:paby03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Ga0080574_TMP3579
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Ga0080574_TMP3579
DNA repair and recombination proteins [BR:paby03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Ga0080574_TMP3579
   NER (nucleotide excision repair)
    Other NER factors
     Ga0080574_TMP3579
   MMR (mismatch exicision repair)
    Other MMR factors
     Ga0080574_TMP3579
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: APZ53913
UniProt: A0A1P8UWZ4
LinkDB All DBs
Position
complement(2976184..2977776)
Genome map
AA seq 530 aa AA seqDB search
MKAFSRLFKAIDQSTKTSVKTAALAEYFRNAPEEDRLWTIALFSGRRPKRAVTTTQLREW
AAERAGLPLWLVEESYPVVGDLAETIALVLPPPSSPSEQTLSHWINILVDLSQVDQDIRK
AQILAAWDGLDETGRFLFNKLITGGFRIGVSRKLMTRALAQATGQDEAALALRLMGDWTP
QTTTWQALIEAPDPQADDSRPYPFYLAYQLDSAPEALGAPEDWLAEWKWDGIRGQLILRG
GAHHVWSRGEELMTDRFPEFARVPDFLPPGHVFDGELVAWDGTQPLPFNALQKRIGRKTV
PKKLLKDAPVILLAYDLLEAAGQDIRDRPFAERRAMLDTLLADLPPDAPLRASPRITFDS
WEALAATRATAREQRAEGLMLKRLDAPYLAGRKKGDWWKWKLDPLSVDAVMIYAQQGHGR
RANLFTDFTFAAWDGNDLVPFTKAYSGLTDAEFNEITTWVRRNTLQRFGPVRQVRPELVF
EIAFEGIQPSPRHKSGLALRFPRMARWRRDKPAQEANTLADLRDMLAAYG
NT seq 1593 nt NT seq  +upstreamnt  +downstreamnt
gtgaaagccttctcccggctctttaaagccatcgaccagagcacgaaaacctctgtaaaa
acagcggctttggcggaatacttcagaaacgcgccagaggaggaccggctctggaccatc
gcgctcttctccgggcggcgcccgaaacgcgcggtcaccaccacgcagctacgcgaatgg
gccgccgaacgcgccgggctgccgctctggctggtcgaggaaagctatccggtggtcggc
gatctggccgagaccatcgccctggtcctgccgccgccctcatccccctcggagcagaca
ttatcccattggatcaatattctggtcgatctttctcaagtcgatcaggacatccgcaag
gcacagatcctcgccgcctgggacgggctcgacgagaccgggcgctttctcttcaacaag
ctgatcaccggcggcttccgcatcggcgtcagccgcaagctcatgacccgcgcgctggcg
caggccaccgggcaggacgaggcggcgctggcgctgcggctgatgggcgactggacaccg
caaaccaccacctggcaggcgctgatcgaggcgcccgacccgcaggccgatgacagccgg
ccctatcccttctacctcgcctatcagctcgacagcgcgcccgaggcgctcggcgcgccc
gaggactggctggcggaatggaaatgggacggcatccgtggccagctcatcctgcgcggc
ggcgcccatcacgtctggtcgcgcggcgaagagctgatgaccgaccgctttccggaattc
gcccgcgtcccggatttcctgccgcccggccatgtgttcgacggcgagctcgtcgcctgg
gacggcacccagcccctgccgttcaacgcgctgcaaaagcgcatcgggcgcaagaccgtg
ccgaaaaagctgctgaaggacgcccccgtgatccttctggcctatgatctgctggaggcg
gcgggtcaggacatccgcgaccgcccctttgccgaacgccgcgccatgctcgatacgctg
ctcgccgatctgccgccggacgcgccgctgcgcgcctcgccgcgcatcacgttcgacagc
tgggaggcgctggccgccacccgcgccaccgcccgcgagcagcgcgccgaggggctcatg
ctgaagcggctggacgccccctatctcgccgggcgcaaaaagggcgactggtggaaatgg
aagctcgatccgctcagcgtcgacgcggtgatgatctatgcccagcagggccacgggcgc
cgcgccaacctcttcaccgatttcacctttgccgcctgggacggcaacgatctggtgcct
ttcaccaaagcctattccggcctcaccgatgccgagttcaacgagatcaccacatgggtg
cggcgcaacacgctgcaacgcttcggcccggtgcggcaggtgcggcccgagctggtcttc
gagatcgccttcgagggcattcagcccagcccgcgccacaaatccggcctcgcgctgcgc
tttccccgcatggcgcgctggcgccgcgacaagccggcacaggaggccaatacgctggcc
gatctgcgcgacatgctcgccgcctatggctga

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