Salipiger abyssi: Ga0080574_TMP4390
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Entry
Ga0080574_TMP4390 CDS
T04681
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paby
Salipiger abyssi
Pathway
paby03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ga0080574_TMP4390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP4390
Enzymes [BR:
paby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ga0080574_TMP4390
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ga0080574_TMP4390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
AAA_16
MFD_D3
AAA_30
RecG_dom3_C
SecA_DEAD
DUF6866_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
APZ54724
UniProt:
A0A1P8UZA9
LinkDB
All DBs
Position
complement(3803554..3807009)
Genome browser
AA seq
1151 aa
AA seq
DB search
MGGAPEGFDARLVLAEAEKSHGPVIHIARDDKRMAALREALAFFAPDMPVMSFPAWDCLP
YDRVSPNPDISAARMSTLAGLVHGMPQRFILLTTLSAATQYLPAREVLREAAFSARVGDR
IDEAGLRAFLVRMGFSQAPTVTEPGDYAIRGGIIDIYPPGEGGPVRLDLFGDVLDGARRF
DAISQRTTEKLDMIELAPVSEVILDEAAITRFRQNYRIEFGAGGTDDPLYESVSAGRKQQ
GMEHWLPFFHERLETLFDYLPGAPVLMDDQLTPARLARWESIEDQYQTRRHAMAQKGRMD
SVYKPVPLGQLYLDDAAWEAALEGRRAVQFHPLQQASGPGVVDAGGRIGRNFAPERQQEN
ISLFSALADHVRKKLQDGPVLIASWSEGARERLTGLIEDEGLAEAIPVSNGTRIGKRGLH
LAVWALESGFEAPWGDPKDRQRITVISEQDVLGDRLIRAPKKRRKAENFLTETQSLSPGD
LVVHVDHGIGRYQGMEVITAAGAAHECLLLEYAEGARLYLPVENIELLSRYGHEDGLLDR
LGGGAWQAKKARLKERIREMADKLIRVAAERALRKAPVIDPPPGAWESFCARFPYTETDD
QIRAIEDVLADMDSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQ
HYKSFAERFRGFPINVAPLSRFVSSGQAAKTRDGIAKGMVDIAVGTHALLAKNIRFQNLG
LLIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRL
AIRTYVSEFDAVTIREALLREHYRGGQSFYVVPRISDLPEIEEFLREQVPEVSYVVAHGQ
MAAGELDDKMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVG
RSKTRAYAYMTTKPRARLTDTAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGYELYQSMLEEAIAKIKSGETEGLLEDDGQWAPQINLGVPVLIPEDYVPDLDVR
LGLYRRLSELSTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKDMCKRAGIAKLDGGPK
GATIQFHNDKFAKPEGLVSFIQDQNGLAKIKDNKIVVRRDWKKDSDKIKGAYAIARDLAE
KAGAIRLKKEA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcgcgcccgaaggcttcgacgccaggctggttctggccgaggccgagaaatcg
cacggccccgtcattcacatcgcgcgcgacgacaagcgcatggctgcgctgcgcgaggcg
ctggcctttttcgcgccggatatgccggtgatgagctttcccgcctgggattgcctgcca
tacgaccgggtgtcgcccaatcccgatatctcggcggcgcgcatgtcgacgctggcgggg
ctggtgcacgggatgccgcagcgcttcatcctgctgaccacgctctcggcggcgacgcag
tatctgcccgcgcgcgaggtgctgcgcgaggcggccttttccgcccgcgtcggcgaccgg
atcgacgaggccgggctgcgcgcctttctcgtgcgcatgggcttttcgcaggcgcccacg
gtgaccgagccgggcgattatgccattcgcggcggcatcatcgacatctatccgccgggc
gagggcgggccggtgcggctcgacctcttcggcgatgtgctggacggggcgcggcgcttt
gacgcgatctcgcagcgcaccaccgaaaagctcgacatgatcgagctggcgccggtctcg
gaggttattctcgatgaggcggcgatcacccggttccggcagaattaccggatcgagttc
ggcgccggcggcaccgacgatccgctttacgagtcggtgagtgccgggcgcaagcagcag
ggcatggagcactggctgccgttcttccacgagcggctggagacgctgttcgattacctg
cccggcgcgccggtactgatggacgaccagcttacgccggcgcggctggcgcgctgggag
agcatcgaggatcagtaccagacccgccgccatgccatggcgcagaagggccggatggac
tcggtctacaagcccgtgccgctggggcagctctatctcgacgatgccgcctgggaggcg
gcgctggagggccgccgcgcggtgcagttccacccgctgcaacaggccagcgggcccggt
gtggtggatgcgggcgggcgtatcgggcgcaatttcgcgcctgagcggcagcaggaaaac
atcagcctcttcagcgctttggcggaccatgttcgcaagaaacttcaggacgggccggtg
ctcatcgcctcctggtccgagggcgcgcgcgaacgtctgaccgggctcatcgaggatgag
gggctggccgaggcgatcccggtttcgaacggtacccgcatcggcaagcgcgggctgcat
ctggcggtctgggcgctggaaagcggcttcgaggcgccttggggcgatccgaaggaccgg
cagcggatcacggtgatttccgagcaggacgtgctgggcgaccgtctgatccgcgcgccg
aaaaagcgccgcaaggccgagaacttcctgaccgagactcagtcgctcagcccgggcgat
ctggtggtgcatgtggatcacggcatcgggcgctatcagggcatggaggtgatcaccgcc
gccggggccgcgcatgaatgcctgctgctggaatatgccgagggcgcgcggctttacctg
ccggtggagaatatcgaactgctgagccgttacggccatgaggacgggctgctcgaccgt
ctcggcggcggtgcctggcaggccaagaaggcgcggctcaaggagcgcattcgcgagatg
gcggacaagctcattcgcgtcgccgccgagcgcgcgctgcgcaaggcgccggtcatcgac
ccgccgccgggcgcctgggagagcttctgcgcgcgcttcccctataccgagaccgacgac
cagatccgcgccatcgaggatgtgctggcggatatggacagcggccagccgatggaccgg
ctgatctgcggcgatgtcggctttggcaagaccgaggtcgccatgcgcgcggcctttgtc
gctgccatgtccggcgtgcaggtggcggtgatcgcgcccaccacgctgctcgcccggcag
cattacaagagctttgccgagcgtttccgcggcttcccgatcaacgtggcgccgctgtcg
cgctttgtctcgtcggggcaggcggccaagacccgcgacggcatcgccaagggcatggtc
gatatcgcggtcggcacccatgcgctgctggccaagaacatccggttccagaatctcggc
ctgctgatcatcgacgaggagcagcatttcggcgtcggccacaaggagcggttgaagcag
ctccgctccgacatccatgtgctgacgctgaccgccacgccgatcccgcgcacgctgcaa
ctgtcgctctcgggcgtgcgggatctgtcgatcattggcacgccgccggtcgaccggctg
gcgatccgcacctatgtgagcgaattcgacgcggtcaccatccgcgaggcgctgctgcgt
gaacattaccggggcgggcagagtttctacgtggtgccgcgtatttcggatcttcccgaa
atagaggaattcctgcgcgaacaggtgcctgaggtgagctatgtcgtggcccacggtcag
atggcggcgggcgagctcgacgacaagatgaacgcgttttacgacggcaagttcgacgtg
ctgctggctaccaccatcgtcgagagcgggctcgacattcccaccgccaacaccatggtg
gtgcaccgcgccgacatgttcgggctggcgcagctttaccagatccgcggccgggtcggg
cgctccaagacgcgcgcctatgcctatatgacgacgaaaccgcgcgcgcggctcaccgat
accgccgaaaaacgcctgcgtgtgctgggctcgctcgacacgctgggggcgggtttcacg
ctggccagccaggacctcgacattcgcggcgccggcaacctgctcggcgaggagcagtcg
ggccagatgcgcgatgtgggctatgagctgtaccagtcgatgctggaagaggcgattgcc
aagatcaagtcgggcgagaccgaggggctgctggaagacgacgggcaatgggcgccgcag
atcaatctcggcgtgccggtgctgatccccgaggattacgtgcccgatctcgacgtgcgg
ctggggctctaccggcgcctcagcgagctttccaccaaggtcgagctcgaaggtttcgcc
gccgagctcatcgaccggttcggcaagctgccgaaggaggtcaacacgctgctcctggtg
gtgcgcatcaaggacatgtgcaagcgcgccggcatcgccaagctcgacggcgggcccaag
ggcgcgacgatccagttccacaacgacaagttcgccaagcccgaggggctggtctctttc
atccaggaccagaacgggcttgccaagatcaaggacaacaagatcgtggtgcggcgcgac
tggaagaaggacagcgacaagatcaagggcgcttatgccatcgcccgcgatctggcggaa
aaggccggcgcgatccggctgaagaaggaggcctga
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