Paenisporosarcina cavernae: D3873_04790
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Entry
D3873_04790 CDS
T05647
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
paek
Paenisporosarcina cavernae
Brite
KEGG Orthology (KO) [BR:
paek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paek03032
]
D3873_04790 (topA)
03400 DNA repair and recombination proteins [BR:
paek03400
]
D3873_04790 (topA)
Enzymes [BR:
paek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D3873_04790 (topA)
DNA replication proteins [BR:
paek03032
]
Prokaryotic type
DNA Topoisomerases
D3873_04790 (topA)
DNA repair and recombination proteins [BR:
paek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D3873_04790 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
RNA_POL_M_15KD
Toprim_4
Toprim_3
DUF2996
Toprim_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AYC29230
UniProt:
A0A385YS75
LinkDB
All DBs
Position
959926..962001
Genome browser
AA seq
691 aa
AA seq
DB search
MADYLVIVESPAKAKTIERYLGKKYKVKASLGHVRDLPRSQTGVDVDNNYEPRYITIRGK
GQVMQELKSAAKKAKKIYLAADPDREGEAIAWHLAHALNIDIQSDCRVVFNEITKDAIKE
SFKHPRPIDMDLVDAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSVALRLIIDREN
EIKNFTPEEYWSIDGQFEKGKKAFEASFYGAGKEKVKLTNEEQVKEILGKMKGNDFNVTK
VTKKERKRNPAPSFTTSSLQQEAARKLNFRARKTMMLAQQLYEGLNIGKEGTVGLITYMR
TDSTRVSDTAKTDAKSYLEEAYGKEYIGNATHASKKSAKAQDAHEAIRPTSVMRHPDTLK
NVLSRDLHRLYKLIWERFIASQMAPAVLDTVAVDLENNGVVFRANGSQVKFAGFMKLYVE
GNDDQVEEKDRILPVMVEGDVVKKIDLDPKQHFTQPPPRYSEARLVKTLEELGIGRPSTY
APTLDTIQKRGYVALDAKRFVPTELGSIVHELVLEFFPDIINIEFTAQMEKDLDEVEEGQ
QKWVTIIDNFYKKFEKDLAIADKEMEKVEIKDEPAGEDCEKCGSPMVFKLGRYGKFMACS
NFPDCRNTKAIVKPIGVECPTCHKGEVVERKSKTKRIFYGCNRYPECDFVSWDKPISRPC
PKCQSLLVEKKLKKGIQIQCTSCDYKEDAQS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcagattatttagtaatcgtagaatcgccagcaaaagcgaaaacgattgaacgatat
ttaggaaaaaagtacaaagtaaaagcatcgctcggacatgtacgtgatttaccacgtagt
caaactggagtagatgtcgacaacaactatgagcctcgatatattacgattcgaggtaaa
ggtcaagtcatgcaagaattgaaaagtgcagcaaaaaaagcgaagaaaatttatctcgca
gccgatccagatcgcgaaggagaagcaattgcgtggcacttagcacatgcgttaaatatt
gatatacaatccgattgccgtgttgtatttaatgagattacaaaagacgctattaaagaa
tcatttaaacatccacgaccaattgatatggatttggtggatgcacagcaagcgagaaga
attttagatcgacttgttgggtataatatcagccctattctatggaagaaagtcaaaaaa
ggattatcggctggacgtgttcaatccgttgcattacgtttaattattgaccgggaaaat
gaaataaaaaatttcacgcctgaagagtactggtccatcgatggtcagtttgaaaaagga
aaaaaggcatttgaagcttctttttatggtgccggaaaagagaaagtgaagttaacaaat
gaagagcaggttaaagaaatattaggtaagatgaagggcaatgatttcaacgtcacgaaa
gttacgaaaaaagaacgaaaacgaaatccggctccatcctttacaacttcttctttacag
caagaagctgctcgtaaattaaacttccgtgcacgaaaaacaatgatgttagctcaacaa
ctttatgaaggtctaaacattgggaaagaaggcacagttgggttaattacctatatgcgt
actgattctactcgagtatcggatacggcaaaaactgatgcaaaatcctatttagaggaa
gcttacggcaaagaatacattgggaatgcgacacatgcttctaaaaaatcagcaaaagcg
caagatgctcatgaagcgatccgtcctacaagtgtcatgcgtcatcctgatacgttaaaa
aatgtattgtctcgggacttacatcgattgtacaaactgatttgggagcgtttcattgcc
agtcaaatggctcccgcagtattagatacggtagcagtagatcttgagaataatggagtt
gtattccgtgcaaatggttcacaagtgaagtttgcaggatttatgaagttgtacgtagaa
ggtaacgacgatcaagtggaagaaaaagaccgtattctaccagtaatggtagaaggggat
gtcgtgaaaaaaatcgatttagatccgaaacaacatttcacacaaccacctcctcgctac
tcagaagcacgtcttgtcaaaacattagaagagttaggaataggtcgcccatcgacttat
gcccctacattagatacgattcaaaaacgtgggtatgttgcgttagatgcaaaacgtttt
gttccaacggagttaggtagtatcgtccatgagcttgtcttagaattcttcccagatatc
atcaatattgagttcactgctcaaatggagaaagatttagatgaagtagaagaaggacaa
cagaaatgggttacgatcattgataatttctacaagaaatttgaaaaagatttagcaatt
gctgataaagaaatggaaaaagtagaaatcaaggacgagcctgctggagaagattgtgag
aaatgtggctctcctatggtctttaaacttggcagatacggtaagtttatggcgtgtagc
aattttccagattgccgtaatacaaaggcaatcgtaaaaccaataggcgtcgaatgtcca
acgtgtcataaaggggaagtagtagaacgtaaaagtaaaacaaaacgaatcttttacgga
tgtaatcgttaccctgagtgtgattttgtttcttgggataagccaatttcaagaccttgt
ccaaaatgtcagtccttgttagtggagaagaagttgaaaaaaggcattcaaattcaatgt
acatcttgtgattacaaagaagatgctcaatcgtaa
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