Pseudomonas aeruginosa SCV20265: SCV20265_2073
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Entry
SCV20265_2073 CDS
T02971
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paes
Pseudomonas aeruginosa SCV20265
Pathway
paes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCV20265_2073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paes03019
]
SCV20265_2073
03009 Ribosome biogenesis [BR:
paes03009
]
SCV20265_2073
Enzymes [BR:
paes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SCV20265_2073
Messenger RNA biogenesis [BR:
paes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCV20265_2073
Ribosome biogenesis [BR:
paes03009
]
Prokaryotic type
rRNA processing factors
SCV20265_2073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHC76187
LinkDB
All DBs
Position
complement(2196906..2200070)
Genome browser
AA seq
1054 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLD
YLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIR
QVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREA
LEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQ
RLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVE
PAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRD
GRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREGREE
RAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREERQPR
EDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSGELE
GSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQDPATTSEAASETTASDETDAPTSE
AVETQGADSEANAGETADIEAPVTVSVVRDEADQSTLLVAQVTEEAPFASESVESREDAE
SAVQPATEAAEEVAAPVPVEVAAPSEPAATEEPTPAIAAVPANATGRALNDPREKRRLQR
EAERLAREAAAAAEAAAQAAPAVEEIPAVASEEASAQEEPAAPQAEEITQADVPSQADEA
QEAVQAEPEASGEDAADTEHAKKAEESETSRPHA
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcgactcaacccgaggagttgcgtgttgcactggtcgacggccaacgc
ctgttcgacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaacatctacaaa
ggccgcatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttcggcgccgaa
cgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaagtcccccgaa
ggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgt
tacctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgtatcgaaggc
gaagagcgcaacgagctgcgcgaggccctgaacggcctcaacgcaccggccgacatgggc
ctgatcgtgcgcaccgccggcctcggccgcagcaccgaggaactgcagtgggacctcgac
tacctgctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggcgcgcccttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaacttcatccgc
caggtgatgccgcagtacgccagcaaggtgaagctgtaccaggacagcgttccgctgttc
aatcgcttccagatcgagagccagatcgagaccgccttccagcgtgaagtgaagctgccg
tccggcggctccatcgtcatcgacccgaccgaggccctggtttccatcgacatcaactcg
gcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtccgcgaagcc
ctcgaggccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggcctgctggaa
atgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtctgcccgcgc
tgcaacggccagggcatcatccgcgatgtcgagtcgctgtcgctggccatcctgcgcctg
atcgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtgcccttccag
gtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaactgcgtacc
cgcgcgcgcatcttcatcctgccggacgatcatctggaaaccccgcatttcgaagtccag
cgtctgcgcgatgacagccccgaactggttgccggccagaccagctacgaaatggccacc
gtcgagcacgaagaagcccagccggtcagctcgacccgcaccctggtccgccaggaagca
gcagtcaagaccgtcgctccccagcagcccgcaccgcaacacaccgaagcaccggtcgag
ccggccaagccgatgcccgagccgagcctgttccagggcctggtgaagtccctggtcggc
ctgttcgcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaagccggctgcc
gagcgccaaacccgccaggacgagcgtcgcaacggccgccagcagaaccgccgccgcgat
ggccgcgatggcaatcgccgcgacgaagagcgcaagccccgcgaggaacgcgcagaacgt
caaccgcgcgaagagcgcgccgaacgcccgaatcgcgaagagcgcagcgaacgccgccgc
gaagagcgcgccgagcgcccggctcgcgaggagcgccagccgcgcgaaggccgtgaagag
cgcgccgagcggacaccccgcgaagaacgccagccgcgcgaaggccgcgaaggtcgcgag
gaacgcagcgaacgccgccgcgaagagcgtgccgaacgcccggctcgcgaagagcgccaa
ccccgcgaaggccgtgaagaacgcgccgagcgcccggcccgcgaagagcgccagccgcgc
gaggatcgccaggctcgcgacgccgcggccctggaagccgaggcgctgccgaacgacgag
agcctggagcaggacgagcaggacgataccgatggcgagcgcccgcgccgccgctcccgc
ggccagcgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagcggcgagctggaa
ggcagcgaggcgaccgataacgccgccgcgccgctgaacaccgtcgcagccgccgctgct
gccggtatcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagacccggccact
accagcgaggctgccagcgaaaccacggcaagcgatgaaaccgacgcaccgaccagcgaa
gccgtcgaaacccagggcgcggacagcgaggccaatgccggcgaaaccgccgacatcgaa
gcgccggtgaccgtcagcgtggtccgggacgaagccgaccagagcaccctgctggtcgcg
caagtcactgaagaagctcccttcgccagcgaaagcgtggaaagccgcgaagacgccgag
agcgccgtgcaaccggcaacggaagcggccgaagaagttgccgctccggtgcccgtcgaa
gtagcagcccctagcgagcccgcagccaccgaggagccgaccccggccatcgcggcggtg
ccggccaacgcgactggccgtgccctcaacgacccacgggaaaaacgtcgcctgcaacgc
gaagccgagcgtctggcacgcgaagccgcagcagcagccgaagcggcagctcaggccgct
cccgccgtcgaggagatcccggctgtagcgagcgaggaagcgtcggcccaggaggaacct
gctgcaccccaggctgaagaaatcacccaggccgacgttccgtcccaggcggacgaagcc
caggaagcggtacaggccgagcctgaagcttccggcgaagacgccgccgacacggagcac
gcgaaaaaggccgaggaaagcgaaacctcgcgcccgcatgcctga
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