Pseudomonas alloputida: LU682_020210
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Entry
LU682_020210 CDS
T09345
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pald
Pseudomonas alloputida
Pathway
pald03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LU682_020210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pald03400
]
LU682_020210 (mfd)
Enzymes [BR:
pald01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LU682_020210 (mfd)
DNA repair and recombination proteins [BR:
pald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LU682_020210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WJR15488
LinkDB
All DBs
Position
4353847..4357296
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNL
AIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITG
AERLAITIAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggtgccgccctcagccttgccatcgccgaagccgccagcagcgctggccgcttc
accctgctgctgacggccgacagccaggccgccgaccgtctggagcaggagctgcgcttc
tttgccccagacctgcccgtgctgccgttccccgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtaccgtctgccggag
ctgagccacggcatcctcgtggtgccgatcaccaccgccctgcaccgcctggcacccacg
cgttttctgctgggcagcagcctggtgctggatgtgggccagaccatcgacgtggaacag
atgcgcctgcgcctggaggccagcggttatcgttgtgtcgacaccgtctacgagcatggc
gagttcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcaaactgccctac
cgcatcgacctgttcgataacgagatcgagacgctgcgcaccttcgaccccgagacccag
cgctcgatcgacaaggtggattcggtgcgcctgctgccagcacgcgaattcccgatgcag
aaggaagaagtgacccgcttcaaggcacgctttcgcgagcgcttcgacgtcgacttccgc
cgcagtgcaatcttccaggacctggccagcggcatcatccccgccggtatcgagtactac
ctgccactgttcttcgaagaaacctcgaccctgttcgactacctgccgaccgacacccag
gtgttctcgctacccggtgtggaacaggccgccgagcacttctggaacgacgtgcgcggg
cgttatgaagaccgccgcggcgacctcagccggccgctgttgccgccggccgagctgttc
ctgccggtggaagattgcttcgcccggctcaagcagtggccccgggtggtggtcagcagc
gaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaacctg
gccatcgaggccaaggccaaccagccgctggccgagctggccaacttcctcgaccagttc
cccggccgcgtgctcttcactgccgaatcagcgggccgccgggaagtgctgctggagctg
ctcgaacggctgaagctgcgcccgcataccgtcgaaggctgggacgacttcattaccggt
gccgagcgcctggcgatcaccatcgccccactggacgacggcctgctgctggacgatcca
gggctggcgctgattgccgaaagcccactgttcggccagcgggtgatgcagcgccggcgc
cgtgacaagcgcggcgaaaccgccaacgacgcggtcatcaagaacctcaccgagctgcgc
gaaggtgcgccggtggtgcacatcgaccatggcgtcggccgctacctgggcctggccacg
ctggaaatcgacggccaggccgccgaattcctgacgctggaatacgccgagaacgccaag
ctgtatgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcaccgctgcaccggctgggttcggaggcctggcagaaagccaagcgcaaggccgcc
gaacaggtccgcgacgtggccgccgaactgctcgacatctatgctcgccgcgccgcgcgc
aagggctacgcgtttgccgacccgtcggctgactacgccaccttcagcgccggcttcccg
ttcgaggagaccccggaccagcaggccgccatcgaggccgtgcgcgccgacatgctggca
cccaagccaatggaccgcctggtctgtggcgacgtgggcttcggcaagaccgaagtggcc
atgcgcgcggcgttcatcgccgtgcacagtggccgccaggtggccgtgctggtgcccacc
accctgcttgcccagcagcattacaacagcttccgcgaccgctttgccgactggcccgtg
accgtggaagtgatgagccgcttcaagtcggccaaagaagtggccgccgccgccgcggac
cttgccgaaggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgacgta
cgcttcaaggacctgggcctggccatcatcgatgaagagcaccgctttggcgtgcgccag
aaagaacagctgaaggcgctgcgcagcgaggtcgatatcctcaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtggcgggcatgcgcgacctgtcgatcatcgccacg
ccgccagcacgccgcctgtctgtgcgcaccttcgtcatggaacagaacaagagcacggtc
aaggaggcgctgctgcgcgaactgttgcgcggtggccaggtgtactacctgcacaacgat
gtgaaaaccatcgaaaaatgcgccgccgaccttgccgagctggtgcccgaggcacgcatc
ggcatcggccacgggcaaatgcgcgaacgcgagctggaacaggtgatgagcgatttctac
cacaagcgtttcaacgtgctggtggcctcgaccattatcgaaaccggtatcgacgtgccc
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccag
ctgcgtggccgggttggccgtagtcaccaccaggcctacgcctacctgctcacacctacc
cgtcagaaggtgagcgccgacgccgaaaagcgcctggaggcgatcgccaacacgcaagac
cttggcgcaggctttgtgctggccaccaacgacctggaaatccgcggtgccggcgagctg
ctgggcgaaggccagagcgggcagatccaggcagtgggcttcaccctgtacatggaaatg
ctcgaacgtgcggtcaaggcaatccgaaaaggtacccagccgaaccttgagcaacccctg
ggtggcggcccggagatcaacctgcgcctgccggcactgatcccagaggactacctgcct
gacgtgcatgcgcgcctgatcctgtacaaacgcattgcctcggctgccgacgaagagggt
ctcaaggacttgcaggtcgagatgatcgaccgcttcggcttgttgccagagccgaccaag
aacctgatgcgcctgacgtcactcaagctgcacgcggaaaagctcggcatcaagaaagtc
gatgcggggcccaacggtggcaagctcgagttcgaagccgaaacaccggtcgacccactg
accctgatcaagctgatccagggtcagcccaaacgttacaagttcgaaggggccacccag
ttccgcttcctggtaccgatggaacgccccgacgaacgtttcaataccctggaggcgctg
ttcgagcgcctgaccccacagcctgcctaa
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