Paludicola sp. MB14-C6: RBG61_04220
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Entry
RBG61_04220 CDS
T09321
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
palm
Paludicola sp. MB14-C6
Pathway
palm00470
D-Amino acid metabolism
palm00550
Peptidoglycan biosynthesis
palm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RBG61_04220 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RBG61_04220 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
palm01011
]
RBG61_04220 (murD)
Enzymes [BR:
palm01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
RBG61_04220 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
palm01011
]
Precursor biosynthesis
Amino acid ligase
RBG61_04220 (murD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
Shikimate_DH
LemA
MurD_N
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
WMJ23880
UniProt:
A0AA51CPW7
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All DBs
Position
complement(884418..885812)
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AA seq
464 aa
AA seq
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MYDKIAAFYSFLKTKKVAFIGLGVSHNDLIKLMLKKGIDVTLLDKREADAIGEQYNELKD
EGANFCLGNDYLASLTDYDVVFRSPGVYFFKDELIKARKNGVVITSEMEVFFDLCPCKIY
AVTGSDGKTTTTTLISEMLKVSGKTVYIGGNIGKALLPLVEEMKPEDVCTVELSSFQLIS
MRQSPDVAVVTNIAPNHLDVHKDMQEYIDCKANLLAHQNAFSKTVLNLDNELGYSLEPYV
RGQLSCFSRQTKPKEGTFLDENGNLCKVHDGNTRILFNKLEIRLPGIHNVENYLAAIAAV
GDEVSDQTILKVAREFGGVEHRIEFVREIDGVKYYNDSIASSPTRTIAGLNSFEQKMIII
AGGYDKKIPYEPLGPVLVERAKILILLGATAPKIEKAVRDCENFETSGLQIVHVSTLEEA
VAKARELAQQGDVVSLSPASASFDLYKNFEERGKHFKRIVNEMQ
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacaaaattgcagcgttttattcttttttaaaaacaaaaaaggtagcattcatt
gggcttggagtaagccataatgatttaattaagttaatgcttaaaaaaggaattgatgta
acgctacttgataaaagagaagcagacgcaatcggcgaacaatataatgagttaaaagac
gaaggggcaaatttttgtttaggcaacgattatcttgcaagcttaactgattatgatgta
gtatttcgttcaccgggtgtatatttctttaaagatgagctgataaaagctcgaaaaaat
ggagttgtcattacgagtgaaatggaagttttctttgatttgtgtccttgtaagatatat
gcagtaacgggttctgacggaaaaactaccacaaccacgcttattagtgaaatgctaaaa
gtaagtggcaaaacagtttacattggtggcaatattggtaaagcgttattgccattagtc
gaagaaatgaaaccggaagatgtttgcactgtggagctttccagctttcaattgatttct
atgagacaatcgcctgatgttgctgtggtaaccaatattgctcctaatcatcttgatgtg
cacaaggatatgcaagagtatattgactgtaaagcaaatctacttgcacaccaaaatgca
ttttctaaaacagttttaaatttggacaatgaacttggatatagcttagaaccatatgta
aggggacaattaagctgcttttctcgacaaaccaaaccaaaagaaggcacattcttggac
gaaaacggaaatctttgcaaagttcatgatggaaatactcgaattttgttcaacaaattg
gaaattaggctacctggtatacacaatgtagaaaattatcttgctgcaattgccgctgtt
ggtgatgaagttagcgaccaaaccatcctaaaagtagcaagggaatttggtggcgtagag
catcgtattgaattcgtacgtgagattgatggtgtaaaatattataatgattcaatcgca
tcaagtccaacaagaacaattgcaggtttaaattcgtttgagcaaaagatgattattatt
gcaggcggatatgataaaaaaataccatatgaaccattaggccctgttttagtagaacga
gcaaaaattttgattttattaggagcaacagcgcctaaaattgaaaaggcagttcgtgat
tgcgaaaattttgaaacaagcggcttacagattgttcatgtatcaacattagaagaagca
gttgccaaagcaagagaattagcccaacaaggcgatgtagtaagcttatctcctgctagt
gcaagctttgatttatataagaactttgaagaacgtgggaagcattttaaacgtatcgta
aacgaaatgcaataa
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