Paracoccus alcaliphilus: JHW40_03240
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Entry
JHW40_03240 CDS
T08960
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
palp
Paracoccus alcaliphilus
Pathway
palp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
palp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JHW40_03240 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palp03400
]
JHW40_03240 (ligD)
Enzymes [BR:
palp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JHW40_03240 (ligD)
DNA repair and recombination proteins [BR:
palp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JHW40_03240 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WCR18750
LinkDB
All DBs
Position
complement(603460..605925)
Genome browser
AA seq
821 aa
AA seq
DB search
MAALETYRKKRDFKATSEPRGRKSHKKGNSFVIQKHAATRLHYDLRLEMDGVLKSWAVTK
GPSLNPDDKRLAVHVEDHPLDYGGFEGTIPKGQYGAGAVIVWDRGSWNPVADPDRGYAKG
HLEFELSGEKLSGRWHLVRMRGKPGEKRENWLLIKGDDAAARAEGDPDILEQRPESVKTG
RMVEDVAKGDVAPKTRALKASPLAPRAKKAALPEFVEPALATLRAAPPTGAQWLHEIKFD
GYRLQARIDGSDIRLLTRSGLDWTDRFGAGIVDALRALPAETALLDGELVVETGNGASDF
PTLQADLSKGRDDRFLLYVFDLLYLDGYDLRKAPLSDRKAALKKLLDAAPATLRYSDHFD
ESGALVLRHACRLSLEGIVSKQSDAPYRSGRGKGWIKSKCSARQEFVVAGYVPSTVSDKA
IGSLVLGVYEDGALQHVGRVGTGFSVRVAEELQASLDKLRVNKSPFAQPLTATEARKVRY
VRPELVAEIEFRAWTADGHLRHASFRGLREDKPAAEIVRETAGVKDAPARPQRRRVTLTH
PDRIYWPDEGITKEGLADYHAEVWPLIAPYIVGRPLALLRCPTGIEGQKFFQKHAWKGMN
KHIVPIHDPKDKKGAPLISITDLDGLMGLVQSAALEIHPWGTTIADWERPDTITMDLDPG
EGVEWQAVIDAAHEVRQRLEDAGLAAFVKTSGGKGLHVVAPLKPKAGWAAVKSFAKAIAD
SMALDSPERYVSTIAKSKRRGRILIDYLRNQRGSTAVAAWSPRARPGAAVSMPLAWEELT
PDIGPDHFTVANVPNRLAVLKADPWQAFRSAEKPLETKRKA
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggcggcactggaaacctatcgcaagaagcgggacttcaaggccacgtccgagcctcgc
gggcggaaatcccacaagaaaggcaactccttcgtcattcagaaacatgcggcgacacgg
ctgcattacgatctgcggctggagatggatggcgtgctgaaaagctgggccgtcaccaag
ggaccaagcctgaaccccgatgacaaacgccttgcggtccatgtcgaggatcatccgctg
gactatggcggcttcgagggtacgattccaaaggggcagtatggtgcaggtgcggtgatt
gtctgggatcgcggcagctggaaccccgtggccgatcccgatcggggctatgcgaagggg
catctggaattcgaactgtcgggcgaaaagctgtcgggacgatggcatctggtgcggatg
cgcggcaagcccggcgaaaagcgcgagaactggctgctgatcaagggcgatgatgctgcg
gcccgtgccgagggcgatcccgatattcttgagcaacgccccgagtcggtgaagaccggg
cgcatggtggaggatgttgcgaaaggcgatgtcgcaccgaaaaccagagcgctcaaggcc
agtccccttgcgccccgcgcgaaaaaggccgcgttgccggagttcgtggaaccggcgctg
gcgacattgcgggctgctccgccgactggtgcgcaatggctgcatgagatcaaattcgac
ggctaccgattgcaggcccggatcgacggatccgatatacggctgctgacccgcagcgga
ctggattggaccgatcgctttggagccgggattgtggacgcgctgcgcgccctgccagct
gagaccgcattgctggacggcgaactggtggtcgaaacaggcaacggcgcctcggatttc
ccgaccctgcaagccgatctgagcaagggacgcgacgaccgttttctgctgtatgtgttc
gatctgctttatctcgacggatatgatctgcgcaaagccccgttgagcgaccgaaaggcg
gctttgaaaaagctgctggacgctgctccggcgacgttgcgctacagcgaccatttcgat
gaaagcggcgcgctggttctgcgccatgcctgccggttgtcgctggaggggatcgtctcg
aaacagtccgatgcgccctatcggtcagggcgcggcaagggctggatcaaatcgaaatgc
tcggcgcggcaggaattcgtggtggcgggttatgtgccctcgacggtgtcggacaaggcc
atcggctcgttggtgctgggtgtttacgaggatggggcgttgcagcatgtgggacgggtg
ggcactggtttttctgtcagggtcgccgaagaacttcaggccagcctggacaagcttcgg
gtcaacaaaagcccattcgcgcaaccgctgaccgcgaccgaagcgcgcaaggttcgctat
gtccgccccgaactggtggccgagatcgagttccgggcatggaccgccgacggtcatctg
cgccatgcgtcgttccggggcctgcgcgaggacaagcccgccgcggaaatcgtccgcgaa
acggcgggtgtgaaggatgcgcccgccaggccccaacgccgtcgcgtcacgctgacccat
cccgaccgcatctattggccggatgagggcatcaccaaagaggggcttgcggattaccat
gccgaagtctggccgctgatcgcgccttatatcgtcgggcgcccgctggcgctgctgcgc
tgccccactggcatcgaaggccagaagttctttcagaagcatgcgtggaaagggatgaac
aaacatatcgtccccatccacgatccgaaggacaagaagggcgcgccgctgatctccatc
actgatctggacgggctgatggggttggtgcaatccgccgcactcgaaatccatccttgg
ggtacgaccatcgccgattgggaacgacccgacacgatcaccatggacctcgatcccggt
gagggcgtcgaatggcaggcggtgatcgacgccgcgcatgaggtgcggcagcggctggag
gacgcggggcttgcggcttttgtgaaaacctcgggtgggaaggggctgcatgtcgtcgca
cccctgaaacccaaggcgggatgggcggcggtcaagagctttgccaaggccatcgccgac
agcatggccctggacagtccggaacgatatgtctcgaccattgcgaaatcgaagcggcgc
ggcaggatcctgatcgactatctgcgcaatcagcgaggctcgacggcggtcgctgcgtgg
tcaccccgcgcccggcccggcgctgcggtgtcgatgcccttggcgtgggaggaactgacc
cccgatatcggcccggatcatttcacggtggcgaatgtgcccaaccgccttgcggtgctg
aaagccgatccgtggcaggcgtttcgttccgcggaaaagcctctggagacgaagcgcaaa
gcctga
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