Pseudoglutamicibacter albus: CJ193_003600
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Entry
CJ193_003600 CDS
T09091
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
palu
Pseudoglutamicibacter albus
Pathway
palu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ193_003600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palu03019
]
CJ193_003600
03400 DNA repair and recombination proteins [BR:
palu03400
]
CJ193_003600
Enzymes [BR:
palu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJ193_003600
Messenger RNA biogenesis [BR:
palu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ193_003600
DNA repair and recombination proteins [BR:
palu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJ193_003600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
MGS
SWI2_SNF2
HTH_IclR
MarR_2
DacZ_P
Motif
Other DBs
NCBI-ProteinID:
WIK84926
LinkDB
All DBs
Position
complement(790589..792784)
Genome browser
AA seq
731 aa
AA seq
DB search
MEHTGNEALSAGIPAGLSADFDAASALAALRRLVGNDSAQFHQGQFEAIEALVGRRRRAL
VVQRTGWGKSAVYFVATALLRAQGAGPTLIISPLLALMRDQIAAAERAGVRAHAINSANA
TEWEQVRAKLAGDQVDVLLVSPERLNNPRFREEQLPQLVERMGLLVVDEAHCISDWGHDF
RPDYRRIKDLIERLPQGVPVLATTATANERVVRDVEEQLAAGGQDVFTLRGPLARKSLRL
GVLRMASPRKQLGWLVQHVGELEGSGIIYALTVSAAEDIAQMLREAGLNVRAYTGRTDQD
ERHELEDALKNNQVKALVATSALGMGFDKPDLGFVVHVGAPSSPVAYYQQVGRAGRGTER
ADVLLLPGPEDREIWRYFASASMPQESVARAVIDALAEAGGPVSVPVLEARVNVRRTALE
LLLKVLAVDGAVERVQGGWVGTGVPWSYDRERYERVAQAREAEQEAMLAYEQTDGCRMRF
LSEQLDDPHAEDCRLCDNCAGRWFPSDVGDEATHLAEGGLSRVGVEIEPRKMYPTGLSAL
GLDVKGRIPTELQAGEGRALARLTDLGWGTRLREMVQQAPDAPVAADVVNACVKVVADWS
AAAGWMGEDGTPSPERPVGVVAMPSARHPQLVSSLASELARIGQMRFIGALEYAGAPPRS
GPGGNSAYRFADVHGAFVVPDAMRDAVASAPGPLLLVDDLVDSRWSLTSAAAVLRQAGAP
GVLPFALAVVG
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggaacatacgggtaacgaggcattgtcagcgggcatacctgctggcttgtctgctgat
ttcgatgcggcttccgcgctcgccgcgctacgccgtctggtgggtaacgattcggcgcag
tttcatcaggggcagttcgaggcgatcgaggcgttggtgggccgccgtcgcagggcgttg
gtggttcagcggacggggtggggtaagtcggctgtgtattttgtggcgactgctttgttg
cgggctcaaggggccggcccgaccttgatcatttcgccgctactggcgttgatgcgtgat
cagatcgcggcggctgagcgggctggcgtgcgtgcgcacgcgatcaattcggcgaacgca
acggagtgggagcaggttcgagccaaactcgctggggatcaggtggatgttctgttggtg
tcgccggaacggttgaataatccgcggttccgcgaagagcaacttccgcagttggttgag
cggatgggtctgctcgtggtggacgaggcgcactgtatttctgactgggggcacgatttc
cggccggattaccgccgaatcaaggacctcatcgaacgcctcccgcaaggggttcctgtt
ttggcgaccaccgcgaccgcgaatgagcgtgtggtgcgggatgttgaggaacagctcgcg
gcgggtggtcaggatgttttcacgttgcgtggcccgttggcgaggaagtcattgcggctg
ggtgttttgcggatggcaagcccgcgcaagcagctcggctggctggtgcagcatgtgggg
gagcttgagggatcagggattatttatgcactcacggtttctgcggcggaggatatcgcg
cagatgctgcgtgaggccgggctgaacgtgcgggcatatacgggccgtacggatcaggat
gagcggcatgagcttgaggatgcgctcaagaataaccaggtcaaggcgttggttgcgacg
tcggcgttgggcatggggttcgataaacctgatcttggtttcgtggtgcatgtgggtgcg
ccgagctcgccggttgcgtattaccagcaggtggggcgtgcgggccgtggcactgagcga
gcggatgtgctgttgttgccggggcctgaggaccgcgagatttggcggtatttcgcttcg
gcttcaatgccgcaggagtctgttgcccgggcagtgatcgatgcgttggctgaggcgggt
gggccggtttcggttccggttctggaagcgcgggtcaatgtccgccggactgcgctggaa
ttgttgcttaaggtgctggctgttgacggcgcggttgagcgcgttcagggtggctgggtt
ggcacgggtgttccgtggagctatgaccgtgaacgttatgaacgggtcgcgcaggcgcgt
gaagcggagcaggaagcgatgctggcttatgagcagacggatggttgccggatgcgtttc
ctctccgagcagctggatgacccgcatgcagaagactgcaggctctgcgataactgtgcc
ggccggtggttcccttctgatgtgggggatgaagccacgcacctcgctgagggtggattg
agccgggttggtgtcgagattgagccgcggaagatgtacccgacgggactgtccgcgttg
ggcctggacgttaagggtcggatccctactgagcttcaagccggtgagggacgtgcgctg
gctcggttgacggacctcgggtggggtacgaggttgcgtgagatggtgcagcaagccccg
gacgcccctgtggccgccgatgtggtgaatgcgtgcgtcaaggttgttgcggattggtcg
gcggcggccggctggatgggggaggacggcacgccatcgccggaacgtccagtgggtgtc
gtagcgatgccttcggcgcggcatccgcagctcgtgtccagcttggcgtcagagctggct
cggattgggcagatgcggttcataggtgcgctcgagtatgcgggggctcctccgcgttcg
ggtccgggaggtaactcggcttaccggttcgcggacgtgcacggtgcgttcgtggtgcct
gatgcgatgcgcgatgcggtggcgtcggcgccgggcccgttgctgttggtcgatgacctc
gtggactcgcgatggtcgctaactagcgcggccgctgtgctgcgccaggcgggtgcgcca
ggggtgcttccttttgctttggcagttgttggttag
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